prot_H-elongata_contig9161.16620.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig9161.16620.1
Unique Nameprot_H-elongata_contig9161.16620.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length105
Homology
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.380e-57
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWVS 104
            M+PKENK  RKLMY+C+RC ++E A+S  CVYRN++ITTAGNKLDIVQ DVVDDPTLQRSK+AICEKCNYNEAVFFQADEG KSQSLSLIFVCTNR CGHKWVS
Sbjct:  134 MHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.670e-39
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 103
            ++PKEN+  R L YAC+RC ++E A  SC VY N+++ T   KLDIV  DVV+DPTLQRSKH IC++CNY+EAVFFQAD+  KS SLSLIFVCT+  CG KWV
Sbjct:   11 LHPKENRTTRTLFYACNRCAYREEAGQSC-VYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A7S3HGL0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGL0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.260e-26
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSR--CTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 103
            +YP+EN+  + L Y C +  C + E    S CV+ N+II  +  +L+++ +DV  DPTLQRS+   C  C +NEAVFFQA++ TKS +L+L+FVC N  CGHKW+
Sbjct:   12 LYPRENRQLKALEYYCKQNDCPYTEINLPSTCVFVNEIIKDSSTRLEVILSDVNKDPTLQRSRDINCTGCGFNEAVFFQAEQTTKSTALNLVFVCCN--CGHKWM 114          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.030e-26
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 0
Query:    3 PKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 103
            P+E +  R LM  C  C ++E A +S  VY N I      +LDI+  ++ DDPTLQRS   +CE CNY+EAV FQA+ G  ++SLSLIFVC N  C HKW+
Sbjct:   45 PREERTTRTLMLNCRNCGYEEPA-TSYKVYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI)

HSP 1 Score: 100 bits (248), Expect = 3.710e-25
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKW 102
            +YP+ENKA ++L YAC RC F E A+ SC VYRN+I  TA  +  ++Q DV  DPTL RSK   C  C + EAVFFQA    + + ++L FVC N  C H+W
Sbjct:   14 LYPRENKAEKRLEYACGRCDFSEDAEQSC-VYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A6U0QUP1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0QUP1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.860e-24
Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWVS 104
            +YPKE+K  R L YAC  C + E +     +YRN I    GN L  V   V DDPTL RS ++ CE C +NEAVFFQ+D G +S SL+LIFVC+N  C  KWV+
Sbjct:   46 LYPKEHKRSRSLRYACRLCRYSEESPHPM-IYRNLIKKEVGNVLHTVPGSVSDDPTLPRSHNSNCESCGHNEAVFFQSDTG-QSDSLALIFVCSN--CEFKWVA 145          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: UPI001D0951AA (DNA-directed RNA polymerase II subunit RPB9 n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D0951AA)

HSP 1 Score: 94.7 bits (234), Expect = 7.870e-23
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 103
            +YPKE+K  + L+YAC  C +++ A S+C +Y N I+        IV  DVV DPTL RS+   C KCNY EAVFFQA      + + L +VCTN  C H+W 
Sbjct:   31 LYPKEDKENKVLLYACRNCDYKQLADSNC-IYVNKIMHEIDELTHIVP-DVVSDPTLPRSEDHHCPKCNYREAVFFQAQTRRAEEEMRLYYVCTNPQCTHRWT 131          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: W7T555_9STRA (Dna-directed rna polymerase ii kDa polypeptide n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T555_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.350e-22
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACS--RCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 103
            +YPKE+K  RKL+Y C   RC  +E A     V+RN +I T    LD V + V +DPTLQRS  A C  C+Y+EAV  Q+ +  KS  L+LIFVC N  CGHKW 
Sbjct:   65 LYPKEDKDERKLVYYCRSPRCDHEEDAPDPY-VFRNQVIKTRTVNLDHVLSAVANDPTLQRST-ADCPLCHYHEAVLIQSTQNVKSNKLTLIFVCCNPNCGHKWT 167          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A8B8JSG6_ABRPR (DNA-directed RNA polymerase subunit n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JSG6_ABRPR)

HSP 1 Score: 90.9 bits (224), Expect = 1.570e-21
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKW 102
            +YPKENK  R L+YAC  C  +E A S+  VYRN+I  +   + + ++ ++  DPTL R+K   C KCN  EAVFF+A + T    +SL+FVC+N  C H+W
Sbjct:   14 LYPKENKEQRILLYACRTCDHEEIADSNI-VYRNEIRQSVERRPEELE-NIASDPTLPRTKSVRCSKCNNGEAVFFRA-KATGEDDMSLVFVCSNLACSHRW 112          
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Match: A0A1X2HED9_SYNRA (DNA-directed RNA polymerase subunit n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HED9_SYNRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.230e-21
Identity = 44/103 (42.72%), Postives = 67/103 (65.05%), Query Frame = 0
Query:    1 MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQADVVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGHKWV 103
            +YP+E+KA R+LM+AC  C ++E A + C VYR++II     +  +V +D+  DPTL R+ +  C +C Y EAVFFQ+        ++L +VC +R CGH+WV
Sbjct:   14 LYPREDKANRRLMFACRNCQYEEDADNFC-VYRHEIIHQPSEQT-MVLSDLSIDPTLPRA-NVTCPQCGYEEAVFFQSSSRRADAKMTLFYVCGDRMCGHRWV 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9161.16620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI1.380e-5782.69TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA1.670e-3963.11DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S3HGL0_9STRA2.260e-2646.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3NJ32_9STRA7.030e-2649.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Y1IMB2_KLENI3.710e-2550.00DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A0A6U0QUP1_9STRA4.860e-2450.96Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
UPI001D0951AA7.870e-2345.63DNA-directed RNA polymerase II subunit RPB9 n=1 Ta... [more]
W7T555_9STRA4.350e-2249.52Dna-directed rna polymerase ii kDa polypeptide n=1... [more]
A0A8B8JSG6_ABRPR1.570e-2145.10DNA-directed RNA polymerase subunit n=1 Tax=Abrus ... [more]
A0A1X2HED9_SYNRA2.230e-2142.72DNA-directed RNA polymerase subunit n=1 Tax=Syncep... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 63..104
e-value: 0.0036
score: 19.8
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 64..102
e-value: 9.5E-5
score: 22.2
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 61..103
score: 9.344
NoneNo IPR availableGENE3D2.20.25.10coord: 1..34
e-value: 6.4E-10
score: 40.4
NoneNo IPR availableGENE3D2.20.25.10coord: 35..104
e-value: 1.2E-21
score: 78.0
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 1..103
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..103
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 42..102
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9161contigH-elongata_contig9161:7832..8797 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9161.16620.1mRNA_H-elongata_contig9161.16620.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig9161 7832..8818 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig9161.16620.1 ID=prot_H-elongata_contig9161.16620.1|Name=mRNA_H-elongata_contig9161.16620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MYPKENKAGRKLMYACSRCTFQEAAKSSCCVYRNDIITTAGNKLDIVQAD
VVDDPTLQRSKHAICEKCNYNEAVFFQADEGTKSQSLSLIFVCTNRGCGH
KWVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS