prot_H-elongata_contig90116.16498.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig90116.16498.1
Unique Name	prot_H-elongata_contig90116.16498.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	75

Homology

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BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.420e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QESFDHVNDWLSEVNRYASEGTSKLLIG
Sbjct:   47 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIG 121

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.420e-44
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESF HVNDWLSEVNRYASEGTSKLLIG
Sbjct:   47 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIG 121

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A812SN87_SYMMI (YPT1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SN87_SYMMI)

HSP 1 Score: 148 bits (373), Expect = 2.060e-44
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVK++KKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT+QESFDHVNDWLSEVNRYASEGT KLL+G
Sbjct:   47 RFRTVKVEKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNQESFDHVNDWLSEVNRYASEGTCKLLVG 121

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A418DSF7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DSF7_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.320e-44
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   44 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 118

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A1V9ZQI8_9STRA (Rab1 family GTPase n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZQI8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.610e-44
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   46 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 120

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A485KKH7_9STRA (Aste57867_8519 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKH7_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.290e-44
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   45 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 119

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A5D6XVZ2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVZ2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 9.460e-44
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKIDKKT+KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   48 RFRTVKIDKKTIKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 122

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.290e-43
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQ+SFDHVNDWL EVNRYASEGT KLL+G
Sbjct:   52 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVG 126

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: H3GC27_PHYRM (Uncharacterized protein n=26 Tax=Oomycota TaxID=4762 RepID=H3GC27_PHYRM)

HSP 1 Score: 148 bits (373), Expect = 2.430e-43
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTVKID KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   63 RFRTVKIDNKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVG 137

[Close]

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Match: F0W1W0_9STRA (Rab1 family GTPase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1W0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.920e-43
Identity = 69/75 (92.00%), Postives = 74/75 (98.67%), Query Frame = 0

Query:    1 RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLSEVNRYASEGTSKLLIG 75
            RFRTV+IDKKT+KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT+QESFDHVNDWL+EVNRYASEGT KLL+G
Sbjct:   46 RFRTVRIDKKTIKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNQESFDHVNDWLNEVNRYASEGTCKLLVG 120

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot

BLAST of mRNA_H-elongata_contig90116.16498.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G118_ECTSI	4.420e-45	98.67	Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=...	[more]
A0A835Z965_9STRA	1.420e-44	98.67	Rab1A, rab family GTPase n=1 Tax=Tribonema minus T...	[more]
A0A812SN87_SYMMI	2.060e-44	93.33	YPT1 protein (Fragment) n=1 Tax=Symbiodinium micro...	[more]
A0A418DSF7_9STRA	2.320e-44	96.00	Uncharacterized protein (Fragment) n=2 Tax=Aphanom...	[more]
A0A1V9ZQI8_9STRA	2.610e-44	96.00	Rab1 family GTPase n=7 Tax=Saprolegniaceae TaxID=4...	[more]
A0A485KKH7_9STRA	3.290e-44	96.00	Aste57867_8519 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A5D6XVZ2_9STRA	9.460e-44	94.67	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A7S3VAP6_9STRA	1.290e-43	94.67	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
H3GC27_PHYRM	2.430e-43	94.67	Uncharacterized protein n=26 Tax=Oomycota TaxID=47...	[more]
F0W1W0_9STRA	2.920e-43	92.00	Rab1 family GTPase putative n=1 Tax=Albugo laibach...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 67..75 score: 18.6 coord: 5..27 score: 56.57
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 1..74 e-value: 1.0E-9 score: 11.5
None	No IPR available	GENE3D	3.40.50.300		coord: 1..75 e-value: 4.6E-29 score: 103.0
None	No IPR available	PANTHER	PTHR24073:SF1110	ZGC:171927	coord: 2..75
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 2..75
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..75 score: 18.511
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 3..75 e-value: 1.3E-26 score: 93.2
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 5..70 e-value: 2.7E-14 score: 51.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..75

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig90116	contig	H-elongata_contig90116:128..2513 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig90116.16498.1	mRNA_H-elongata_contig90116.16498.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig90116 128..2513 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig90116.16498.1 ID=prot_H-elongata_contig90116.16498.1|Name=mRNA_H-elongata_contig90116.16498.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
RFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQES
FDHVNDWLSEVNRYASEGTSKLLIG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase