prot_H-elongata_contig90019.16491.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig90019.16491.1
Unique Nameprot_H-elongata_contig90019.16491.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
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BLAST of mRNA_H-elongata_contig90019.16491.1 vs. uniprot
Match: A0A6A4YXI7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.400e-9
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:    1 YVLALVDDVSSFVFLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPHFKNETLKLVAAKL 63
            YVL L DD++ FV L    S TS+VA  +I++W ++ G PEV++SDG  HFKN  +K +A +L
Sbjct: 1050 YVLVLKDDLTHFVRLIACDSPTSQVAVDAIMDWSAMFGVPEVWISDGGSHFKNNIMKALAHRL 1112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig90019.16491.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A4YXI7_9STRA1.400e-947.62Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..75
e-value: 4.7E-10
score: 41.0
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..83
score: 10.173
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig90019contigH-elongata_contig90019:2333..2584 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig90019.16491.1mRNA_H-elongata_contig90019.16491.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig90019 2333..2584 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig90019.16491.1 ID=prot_H-elongata_contig90019.16491.1|Name=mRNA_H-elongata_contig90019.16491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
YVLALVDDVSSFVFLQPAASCTSEVAARSILEWVSVLGTPEVFVSDGAPH
FKNETLKLVAAKLGASYRFRWHTHRGAMILWRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf