prot_H-elongata_contig89952.16484.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig89952.16484.1
Unique Nameprot_H-elongata_contig89952.16484.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length190
Homology
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 5.660e-46
Identity = 110/250 (44.00%), Postives = 127/250 (50.80%), Query Frame = 0
Query:    1 MEHLPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGG----------NVPAIGLLWSHCINTRFMVYRRDYRLPLLMSSSSMPINIDGQQQLPVSSSGGGL----------------------------------------------------LSNAVAREITLEMSPCLPVHIRCAFVIERDGISGVG 188
            MEHLP +M +  ++LVVIDSIAALFRSDL  GRGDIGERSRLLGRLSQQMKRLGDRH AAFVVVNQ         +T  FG++   GG                    +VPA+GLLWS CINTRF V RRDYRL L    SS   +       P   +   L                                                      +A+AREITL+MSPC+PVH RC FV+ER G+ GVG
Sbjct:  184 MEHLPHIMRSQNVKLVVIDSIAALFRSDLGCGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ---------VTAKFGSSTIGGGXXXXXXXXXXXXXXXXXXXXSVPAMGLLWSQCINTRFKVRRRDYRLSLQPPPSSESGSRQRATPNPRDQNSSSLSLPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAIAREITLDMSPCVPVHARCGFVVERSGVRGVG 424          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.580e-33
Identity = 75/121 (61.98%), Postives = 87/121 (71.90%), Query Frame = 0
Query:    1 MEHLPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREA---------GGNVPAIGLLWSHCIN 112
            MEHLP +M +  ++LVVIDSIAALFRSD+ RGRGDIGERSRLLGRLSQQMKRLGDRH AAFVVVNQ         +T  FG++   GG  G+G+           GG+VPA+GLLWS CIN
Sbjct:  184 MEHLPHIMRSQNVKLVVIDSIAALFRSDMGRGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ---------VTARFGSS-TIGGGGGRGQGTMGVVGGSGGGGSVPAMGLLWSQCIN 294          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A4D9CSH0_9STRA (RECA_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSH0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.070e-18
Identity = 65/176 (36.93%), Postives = 93/176 (52.84%), Query Frame = 0
Query:   13 IRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNV-PAIGLLWSHCINTRFMVYRRDYRLPLLMSSSSMPINIDGQQQLPVSSSGGGLLSNAVAREITLEMSPCLPVHIRCAFVIERDGISGV 187
            IRL VIDS++ALFR +    +GD  ER++++  +++QMKRL DR    FVV NQ         +T  F AA       G     G  V PA+GL WS+C++TRF++ RRD     L+ S   P +          +   G  S  + R + L +SP LP ++ C FV+E  G+ GV
Sbjct:  186 IRLCVIDSMSALFRGEFSLSKGDTLERAKMIFTMAKQMKRLSDRWGLPFVVTNQ---------VTADFAAATFGVWEGGNADVVGDGVQPALGLSWSNCVHTRFLLSRRDANN--LIPSFPTPGSNPPSNPATADARSTGQSSRWI-RHMRLLLSPSLPSNLSCRFVLETAGVRGV 349          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: W4H963_9STRA (RECA_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H963_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.890e-15
Identity = 50/122 (40.98%), Postives = 64/122 (52.46%), Query Frame = 0
Query:    4 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 125
            LP LME HG+RLVV+DSIAA+FR   V    D GER+R++  +   M  L  ++RA FVVVNQ                               GN+PA+GL WS CIN RF++ R+  R P
Sbjct:  124 LPSLMEFHGVRLVVVDSIAAVFRGHSVDKAADAGERTRIMFDIVHCMHILAKQYRAVFVVVNQMTAD-----------------------MHNDGNMPALGLAWSSCINQRFLI-RKSVRAP 221          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A485L2Y6_9STRA (Aste57867_14947 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L2Y6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.340e-14
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 0
Query:    4 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYR 119
            LP+LM+ HG+RLVV+DS+AA+FR   V    + GER+R +  +   M+ L  ++RA F+VVNQ                      SA    E   NVPA+GL WS C+N RF++++
Sbjct:  126 LPQLMQLHGVRLVVVDSVAAIFRGHSVEKASEAGERARTMFEIVNTMRILAKQYRAVFIVVNQM---------------------SANMHSE---NVPALGLAWSSCVNQRFLLHK 217          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A024US34_9STRA (RECA_2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US34_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.340e-14
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 0
Query:    4 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 125
            LP LME HG+RLVV+DSIAA+FR   V    D G+R+R++  +   M  L  ++RA F+VVN                             +  GN+PA+GL WS C+N RF++ R+  R P
Sbjct:  125 LPSLMELHGVRLVVVDSIAAVFRGQSVEKAADAGDRTRMMFDIVHCMHILAKQYRAVFIVVNHMTAD-----------------------MQKDGNIPALGLAWSSCVNQRFLI-RKSARSP 222          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A397F2C1_9STRA (RECA_2 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F2C1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.360e-14
Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 0
Query:    4 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 125
            LP LME HG+RLVV+DSIAA+FR   V    D GER+R++  +   M  L  ++RA FVVVNQ                            +  GN+PA+GL WS CIN RF++ R+  R P
Sbjct:  124 LPSLMEFHGVRLVVVDSIAAVFRGHSVDKAADAGERTRIMFDIVHCMHILAKQYRAVFVVVNQMTAD-----------------------MQNDGNMPALGLAWSSCINQRFLI-RKSVRAP 221          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: UPI001CB94751 (DNA repair protein XRCC3 homolog n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94751)

HSP 1 Score: 79.3 bits (194), Expect = 2.550e-14
Identity = 56/177 (31.64%), Postives = 94/177 (53.11%), Query Frame = 0
Query:   12 GIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNV-PAIGLLWSHCINTRFMVYRRDYRLPLLMSSSSMPINIDGQQQLPVSSSGGGLLSNAVAREITLEMSPCLPVHIRCAFVIERDGISGV 187
             ++L+VIDSIAALFRSD     GD+ +R+ L  ++S  +K   +R   A V+ NQ         + ++ G +G   G+  +   +G  V PA+GL W++C+N+R           L +S + +   +  +  LPV  +GG  ++    RE+ +  +P LP H  C F+I ++G+ GV
Sbjct:  141 NVKLIVIDSIAALFRSDFENNAGDLKKRASLFFKISSVLKTYANRFGIAVVLTNQV-----VDLMGDNDGLSGVRVGNLEEMYTSGRRVCPALGLSWANCVNSR-----------LFLSMNEVVEAVGNENNLPVDENGG-FVNRRKRRELHVVFAPHLP-HSSCEFLIRKEGVFGV 299          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: W4HBI8_9STRA (RECA_2 domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBI8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.930e-14
Identity = 47/117 (40.17%), Postives = 61/117 (52.14%), Query Frame = 0
Query:    4 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRR 120
            LP LME HG+RLVV+DSIAA+FR   V    D GER+R++  +   M  L  ++RA FVVVNQ                               GN+PA+GL WS CIN R+++  R
Sbjct:  124 LPSLMEFHGVRLVVVDSIAAVFRGHSVDKAADAGERTRIMFDIVHCMHILAKQYRAVFVVVNQMTAD-----------------------MHNDGNMPALGLAWSSCINQRYVLDER 217          
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Match: A0A6G0WDY1_9STRA (RECA_2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDY1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.570e-14
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 0
Query:    4 LPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQMKRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNVPAIGLLWSHCINTRFMVYRRDYRLP 125
            LP LM+ HG+RLVVIDSIAA+FR   V    + G+R+R++  +   M+ L +++RA F+VVNQ   +     + N                    NVPA+GL WS CIN RF++ R+  R P
Sbjct:  122 LPSLMQLHGVRLVVIDSIAAIFRGQSVEKASEAGDRTRVMFDVVNCMRILANQYRAVFIVVNQMSAN-----LQND-------------------NVPALGLAWSSCINQRFLI-RKTPRSP 218          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89952.16484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY82_9PHAE5.660e-4644.00RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LGE7_ECTSI1.580e-3361.98RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CSH0_9STRA2.070e-1836.93RECA_2 domain-containing protein n=2 Tax=Monodopsi... [more]
W4H963_9STRA4.890e-1540.98RECA_2 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A485L2Y6_9STRA1.340e-1438.79Aste57867_14947 protein n=1 Tax=Aphanomyces stella... [more]
A0A024US34_9STRA1.340e-1437.70RECA_2 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A397F2C1_9STRA1.360e-1440.98RECA_2 domain-containing protein n=3 Tax=Aphanomyc... [more]
UPI001CB947512.550e-1431.64DNA repair protein XRCC3 homolog n=1 Tax=Erigeron ... [more]
W4HBI8_9STRA5.930e-1440.17RECA_2 domain-containing protein n=9 Tax=Aphanomyc... [more]
A0A6G0WDY1_9STRA6.570e-1439.34RECA_2 domain-containing protein n=1 Tax=Aphanomyc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 2..119
e-value: 5.6E-16
score: 58.6
NoneNo IPR availablePANTHERPTHR22942:SF63RE19845Pcoord: 3..67
coord: 96..187
NoneNo IPR availablePANTHERPTHR22942RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBERcoord: 3..67
coord: 96..187
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 1..67
score: 14.817
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89952contigH-elongata_contig89952:236..1949 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89952.16484.1mRNA_H-elongata_contig89952.16484.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig89952 236..1949 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig89952.16484.1 ID=prot_H-elongata_contig89952.16484.1|Name=mRNA_H-elongata_contig89952.16484.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MEHLPRLMEAHGIRLVVIDSIAALFRSDLVRGRGDIGERSRLLGRLSQQM
KRLGDRHRAAFVVVNQARCSGCACCITNSFGAAGATGGSAGQGREAGGNV
PAIGLLWSHCINTRFMVYRRDYRLPLLMSSSSMPINIDGQQQLPVSSSGG
GLLSNAVAREITLEMSPCLPVHIRCAFVIERDGISGVGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase