prot_H-elongata_contig8978.16475.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8978.16475.1
Unique Nameprot_H-elongata_contig8978.16475.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
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BLAST of mRNA_H-elongata_contig8978.16475.1 vs. uniprot
Match: D8LDD0_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD0_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.430e-5
Identity = 47/124 (37.90%), Postives = 58/124 (46.77%), Query Frame = 0 
Query:   15 SRTATFPLFDVAE------TLHRPGSSSVAPSQSDN---------CPLLGPNNFATCSTGSDPTKDEAHSVEAGGL----GLPITGFLRVEVVPLAGSEVTFRPGEARRAELIRQREGADKTER 119
            +R A FPL DV        T H     S + + SD+           L  P   A  S    PT     +   G +    G  + GFL+VE+V L G+EVTFRPGEAR AELI+QR  A   ER
Sbjct:  118 ARLAIFPLVDVTSDGGGTSTKHPQSHPSNSSASSDDGFGNQRCAAAQLNDPMCIALASGEGRPTAGADAASPPGTMENTAGFRLKGFLKVELVGLDGAEVTFRPGEARIAELIKQRNDAAAAER 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8978.16475.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDD0_ECTSI1.430e-537.90PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8978contigH-elongata_contig8978:6857..7477 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8978.16475.1mRNA_H-elongata_contig8978.16475.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8978 6856..7477 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8978.16475.1 ID=prot_H-elongata_contig8978.16475.1|Name=mRNA_H-elongata_contig8978.16475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
AAASFPPHPPQHVNSRTATFPLFDVAETLHRPGSSSVAPSQSDNCPLLGP
NNFATCSTGSDPTKDEAHSVEAGGLGLPITGFLRVEVVPLAGSEVTFRPG
EARRAELIRQREGADKTEREVTVGKQ
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