prot_H-elongata_contig8962.16459.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig8962.16459.1
Unique Name	prot_H-elongata_contig8962.16459.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	137

Homology

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 9.940e-38
Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 0

Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 136
            +YV+VARVR+ G   KL  TWTGPWRVV    +HV  V++I  G+ ++VHV R+R YADS L V  ++++VFQ +  QGE EM  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct:   19 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 153

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.320e-35
Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 0

Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 136
            +YV+VARVR+ G   KL  TWTGPWRVV    +HV  V++I  G+ ++VHV R+R YADS L V  ++++VFQ +  QGE EM  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct:  274 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 408

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 4.580e-34
Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 0

Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGK-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 136
            +YV+VARVR+ G   KL  TWTGPWRVV    +HV  V++I  G+ ++VHV R+R YADS L V  ++++VFQ +  QGE EM  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP++++Q+L +M
Sbjct: 1497 DYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKM 1631

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-17
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 0

Query:    9 RKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM 136
            R    V  L     G + +V     HV  V++I +GE ++VHV R+R YAD+ L +  E++EVFQ    QGEFEMA ++ +       G + V++ WVG + EE TWE +S ++  AP++++ +L R+
Sbjct: 1584 RASARVGSLPDFVVGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRL 1710

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.340e-14
Identity = 45/131 (34.35%), Postives = 74/131 (56.49%), Query Frame = 0

Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 131
            ++VL +RV       KL+  W GP+RVV    +H  ++E + T +  EVH  R++ Y DS L V  E++E   + K      +  +++   +P    ++ VQ+AW+GLED E +WEP+  IYAD P  +++
Sbjct:  229 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 355

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.160e-14
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 0

Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 131
            ++VL +RV       KL+  W GP+RVV    +H  +++ + T +  EVH  R++ Y DS L V  E++E   + K      +  +++   +P    ++ VQ+AW+GLED E +WEP+  IYAD P  +++
Sbjct:  852 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 978

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.290e-14
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 0

Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 131
            ++VL +RV       KL+  W GP+RVV    +H  +++ + T +  EVH  R++ Y DS L V  E++E   + K      +  +++   +P    ++ VQ+AW+GLED E +WEP+  IYAD P  +++
Sbjct: 1268 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKVQE 1394

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.580e-13
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 0

Query:    1 NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTIYADAPKYIEQ 131
            ++VL +RV       KL+  W GP+RVV    +H  +V+ + T +  EVH  R++ Y DS L V  E++E       QG      V+ V        ++ VQ+AW+GLED E +WEP+ +IY D P  +++
Sbjct: 1083 DFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELKE---HVAKQGI-----VLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKVQE 1204

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.630e-11
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 0

Query:   20 TWTGPWRVVPGGSEHVRVVEDIATGETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVI 87
            TWTGPWR+V     HV  V++I  GE ++VHV R+R YAD+ L +    ++VF+    Q EFEMA ++
Sbjct:    2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQEEFEMAAIV 69

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BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Match: A0A6H5L994_9PHAE (Chromo domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-9
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0

Query:   44 GETQEVHVVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYRVQIAWVGLEDEEPTWEPMSTI 121
            GE ++VHV R+R YAD+ L +  E+ + FQ    QG FEMA ++ V +     G + V++ WVG + +E  WE +S I
Sbjct:    4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPG-FDVEVEWVGFDKDENIWEELSKI 80

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot

BLAST of mRNA_H-elongata_contig8962.16459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KAI3_9PHAE	9.940e-38	47.45	Chromo domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JVS6_9PHAE	3.320e-35	47.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7F6_9PHAE	4.580e-34	47.45	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5A5_9PHAE	1.240e-17	36.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6G0RPX5_9STRA	1.340e-14	34.35	Uncharacterized protein n=4 Tax=Phytophthora fraga...	[more]
A0A6A4G1U2_9STRA	5.160e-14	33.59	Uncharacterized protein n=1 Tax=Phytophthora rubi ...	[more]
A0A6A3KPV3_9STRA	5.290e-14	33.59	Uncharacterized protein n=3 Tax=Phytophthora rubi ...	[more]
A0A225VKM9_9STRA	4.580e-13	35.11	RNA-directed DNA polymerase n=1 Tax=Phytophthora m...	[more]
A0A6H5LBX7_9PHAE	2.630e-11	45.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L994_9PHAE	1.090e-9	39.74	Chromo domain-containing protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 74..134 e-value: 1.3E-5 score: 26.8
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 81..136 score: 10.132

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig8962	contig	H-elongata_contig8962:5392..5802 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig8962.16459.1	mRNA_H-elongata_contig8962.16459.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig8962 5392..5802 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig8962.16459.1 ID=prot_H-elongata_contig8962.16459.1|Name=mRNA_H-elongata_contig8962.16459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
NYVLVARVRKPGHVRKLVQTWTGPWRVVPGGSEHVRVVEDIATGETQEVH
VVRMRPYADSFLVVGVEVREVFQMTKHQGEFEMADVISVGKDPARVGKYR
VQIAWVGLEDEEPTWEPMSTIYADAPKYIEQKLWRM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000953	Chromo/chromo_shadow_dom