prot_H-elongata_contig89423.16443.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig89423.16443.1
Unique Name	prot_H-elongata_contig89423.16443.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	150

Homology

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BLAST of mRNA_H-elongata_contig89423.16443.1 vs. uniprot
Match: D7FIS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS0_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.620e-64
Identity = 108/150 (72.00%), Postives = 125/150 (83.33%), Query Frame = 0

Query:    1 RTHSLPLVIILASRAISSRSFPPRDLLLPCALCIAGFALGVHSQTPEAFWDGTSVGVLASVLTAAYTMLLARAEPREAWRVTYVTNRNASVLLVPAAVYIGMGDPTYLAVEPFLLKDCDTMLLAIMATILPALAGVSTMWQAQAGLGATG 150
            R  +LP V ++   A+ SR+ PPRDLLLPC LC+ GF+LGV SQTPEAF DGTS+GV+AS+LTAAYT LLARAEPREAWRVTYVTNRNASV+LVP AVY+GMGDP   A +PFLLKD  T++LA MAT+LPA+AGV TMWQAQA LGA G
Sbjct:  134 RALTLPFVTVMG--AVGSRALPPRDLLLPCVLCMVGFSLGVQSQTPEAFADGTSMGVMASLLTAAYTRLLARAEPREAWRVTYVTNRNASVILVPVAVYVGMGDPNDFAGDPFLLKDGSTIILAAMATLLPAVAGVCTMWQAQARLGARG 281

[Close]

BLAST of mRNA_H-elongata_contig89423.16443.1 vs. uniprot
Match: A0A6H5KAP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAP8_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 9.880e-64
Identity = 109/150 (72.67%), Postives = 126/150 (84.00%), Query Frame = 0

Query:    1 RTHSLPLVIILASRAISSRSFPPRDLLLPCALCIAGFALGVHSQTPEAFWDGTSVGVLASVLTAAYTMLLARAEPREAWRVTYVTNRNASVLLVPAAVYIGMGDPTYLAVEPFLLKDCDTMLLAIMATILPALAGVSTMWQAQAGLGATG 150
            R  +LP V ++   A+ SR+ PPRDLLLPC LC+ GF+LGV SQTPEAF DGTS+GV+AS+LTAAYT LLARAEPREAWRVTYVTNRNASV+LVP AVY+GMGDP   + EPFLLKD  T+LLA+MAT+LPA+AGV TMWQAQA LGA G
Sbjct:  383 RALTLPFVTVMG--AVGSRALPPRDLLLPCVLCVVGFSLGVQSQTPEAFADGTSMGVMASLLTAAYTRLLARAEPREAWRVTYVTNRNASVILVPVAVYVGMGDPNDFSGEPFLLKDGSTILLAVMATLLPAVAGVCTMWQAQARLGARG 530

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig89423.16443.1 vs. uniprot

BLAST of mRNA_H-elongata_contig89423.16443.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FIS0_ECTSI	1.620e-64	72.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KAP8_9PHAE	9.880e-64	72.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 26..43
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 141..150
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 122..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 49..71
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 103..121
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 44..48
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 83..102
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 72..82
None	No IPR available	TMHMM	TMhelix		coord: 21..43
None	No IPR available	TMHMM	TMhelix		coord: 91..110
None	No IPR available	TMHMM	TMhelix		coord: 48..70
None	No IPR available	TMHMM	TMhelix		coord: 120..142

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig89423	contig	H-elongata_contig89423:661..2416 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig89423.16443.1	mRNA_H-elongata_contig89423.16443.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig89423 661..2416 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig89423.16443.1 ID=prot_H-elongata_contig89423.16443.1|Name=mRNA_H-elongata_contig89423.16443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
RTHSLPLVIILASRAISSRSFPPRDLLLPCALCIAGFALGVHSQTPEAFW
DGTSVGVLASVLTAAYTMLLARAEPREAWRVTYVTNRNASVLLVPAAVYI
GMGDPTYLAVEPFLLKDCDTMLLAIMATILPALAGVSTMWQAQAGLGATG