prot_H-elongata_contig89346.16435.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig89346.16435.1
Unique Nameprot_H-elongata_contig89346.16435.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig89346.16435.1 vs. uniprot
Match: D8LPM2_ECTSI (TPR repeat-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.900e-18
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 0 
Query:    1 DDQATRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDPSHKASHY 45
            DD +TRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDP+HKASHY
Sbjct:   36 DDPSTRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDPAHKASHY 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89346.16435.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPM2_ECTSI4.900e-1893.33TPR repeat-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 41..74
e-value: 3.8E-5
score: 33.1
coord: 7..40
e-value: 0.0016
score: 27.7
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 7..40
score: 11.299
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 41..74
score: 11.24
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 45..88
e-value: 1.3E-15
score: 59.0
coord: 8..44
e-value: 4.2E-8
score: 34.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 7..85
NoneNo IPR availablePFAMPF13432TPR_16coord: 13..74
e-value: 1.5E-12
score: 47.9
NoneNo IPR availablePANTHERPTHR44943FAMILY NOT NAMEDcoord: 7..88
NoneNo IPR availablePANTHERPTHR44943:SF7CELLULOSE SYNTHASE OPERON PROTEIN Ccoord: 7..88
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 7..88
score: 23.678

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89346contigH-elongata_contig89346:1296..2283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89346.16435.1mRNA_H-elongata_contig89346.16435.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig89346 1296..2283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig89346.16435.1 ID=prot_H-elongata_contig89346.16435.1|Name=mRNA_H-elongata_contig89346.16435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
DDQATRARRVYHMGNLLQKRGEVKEAAKMYRSAVKLDPSHKASHYNLGIA
LQELGELDEAAACYEKAITLAPDYVLAHYNLAYVRQDQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom