prot_H-elongata_contig88997.16409.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88997.16409.1
Unique Nameprot_H-elongata_contig88997.16409.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length64
Homology
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 58.9 bits (141), Expect = 9.320e-9
Identity = 27/64 (42.19%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYR--DSRKKVGLLKKAMYGLVHAGLLW 63
            VL++ A  GW+  QLDV   ++  ++EEE+Y+E+P+ ++  + R KV LLKKA+YGL  +   W
Sbjct:   87 VLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438FD45_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FD45_VITVI)

HSP 1 Score: 58.5 bits (140), Expect = 1.710e-8
Identity = 27/62 (43.55%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 63
            L+++ A  WE  Q+DVN  ++  D+EEE+Y++LPE ++ +RK KV  L+K++YGL  A   W
Sbjct:  150 LAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATRKNKVCKLQKSLYGLKQASRQW 211          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A1R3I9P8_COCAP (No apical meristem (NAM) protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3I9P8_COCAP)

HSP 1 Score: 58.5 bits (140), Expect = 1.920e-8
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 MVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKKVGLLKKAMYGLVHAGLLW 63
            ++LS+ A  GW  +QLD+N  ++  D+EEE+Y++LPE Y     KV  L K++YGL  A   W
Sbjct:  411 LLLSLAAIHGWHLQQLDINNAFLHGDLEEEVYMKLPEGYSAEPNKVCRLIKSLYGLKQASRQW 473          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: UPI0016531EF6 (uncharacterized protein LOC118479628 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531EF6)

HSP 1 Score: 57.4 bits (137), Expect = 4.920e-8
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    2 VLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYR-DSRKKVGLLKKAMYGLVHAGLLW 63
            VLSM+    WE  QLD+N  ++  D+ EEIY+ LP+ Y   S  KV  LKK++YGL  A  +W
Sbjct: 1123 VLSMVVHFNWEIYQLDINNAFLYGDLNEEIYMFLPDGYNPSSESKVCKLKKSLYGLKQAPRMW 1185          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438KJS5_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KJS5_VITVI)

HSP 1 Score: 57.0 bits (136), Expect = 6.420e-8
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 63
            L++  A  WE  Q+DVN  ++  D+EEE+Y++LPE ++ +RK KV  L+K++YGL  A   W
Sbjct:    8 LAVAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATRKNKVCKLQKSLYGLKQASRQW 69          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A7S1SHQ1_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S1SHQ1_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 8.460e-8
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYR----DSRKKVGLLKKAMYGLVHAGLLW 63
            L++ A   WE  QLDV   ++EAD+EEEIY+  PE +R    +  ++V LLKK++YGL  A   W
Sbjct:   11 LALAAYNDWEVEQLDVVTAFLEADIEEEIYMRQPEGFRHFDINGEERVCLLKKSLYGLKQAPRNW 75          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A7S0MH90_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MH90_9CRYP)

HSP 1 Score: 55.8 bits (133), Expect = 1.680e-7
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 0
Query:   11 WEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKKVGLLKKAMYGLVHAGLLW 63
            W  RQ DV+  Y+ A +EEEIYVE P  + +S KK+ LLKK++YG   +   W
Sbjct:  164 WGIRQFDVSTAYLNAPIEEEIYVEPPPGFEESDKKIWLLKKSLYGAKQSAKNW 216          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 55.8 bits (133), Expect = 1.710e-7
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 63
            L+++ A  WE  Q+DVN  ++  D+EEE+Y++LPE ++ + K KV  L+K++YGL  A   W
Sbjct:  647 LAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: W9RQX6_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RQX6_9ROSA)

HSP 1 Score: 55.5 bits (132), Expect = 2.350e-7
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKKVGLLKKAMYGLVHAGLLW 63
            LS+ A L W  +QLDV   ++  D+EEE+Y+E+P  + D   +V  LKK++YGL  +   W
Sbjct:   75 LSITANLDWSLQQLDVKNAFLNGDLEEEVYMEMPPGFEDKGDQVCKLKKSLYGLKQSPRAW 135          
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 54.3 bits (129), Expect = 5.920e-7
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    3 LSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRK-KVGLLKKAMYGLVHAGLLW 63
            L++  A  WE  Q+DVN  ++  D+EEE+Y++LPE ++ + K KV  L+K++YGL  A   W
Sbjct:  178 LAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88997.16409.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RGT1_CAJCA9.320e-942.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FD45_VITVI1.710e-843.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A1R3I9P8_COCAP1.920e-842.86No apical meristem (NAM) protein n=1 Tax=Corchorus... [more]
UPI0016531EF64.920e-846.03uncharacterized protein LOC118479628 n=1 Tax=Helia... [more]
A0A438KJS5_VITVI6.420e-843.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A7S1SHQ1_9CHLO8.460e-844.62Hypothetical protein (Fragment) n=2 Tax=Eukaryota ... [more]
A0A7S0MH90_9CRYP1.680e-747.17Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A438E4T4_VITVI1.710e-741.94Retrovirus-related Pol polyprotein from transposon... [more]
W9RQX6_9ROSA2.350e-740.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI5.920e-741.94Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..63
e-value: 4.5E-10
score: 39.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88997contigH-elongata_contig88997:2362..2553 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88997.16409.1mRNA_H-elongata_contig88997.16409.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88997 2122..2553 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88997.16409.1 ID=prot_H-elongata_contig88997.16409.1|Name=mRNA_H-elongata_contig88997.16409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MVLSMIAALGWEARQLDVNMVYMEADVEEEIYVELPEAYRDSRKKVGLLK
KAMYGLVHAGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2