prot_H-elongata_contig88970.16406.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig88970.16406.1
Unique Name	prot_H-elongata_contig88970.16406.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	137

Homology

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A6H5L6L8_9PHAE (RNA_pol_sigma70 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6L8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 9.160e-47
Identity = 80/140 (57.14%), Postives = 104/140 (74.29%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSLDAKAWTRTAN---EDEHSNYRVEDTVRSTQEQVPL 137
            MIQDGTAGLVKAVE+FDPEKGFRFSTYA+WWVHQGIH G A+ GR +RLPM++H MVC+V R ++ + D LGR PT  E+++ +GL E KV+ C+RVN+VEP SLD     ++ +   E+     RV D+V+S QE  P+
Sbjct:  266 MIQDGTAGLVKAVERFDPEKGFRFSTYATWWVHQGIHCGFADCGRVVRLPMSLHTMVCKVMRLQTAMVDQLGRQPTVQELSLESGLDERKVEKCLRVNQVEPISLDGYRKGKSGHLNFENSFRRERVGDSVKSVQETEPV 405

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A431ILK6_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431ILK6_9ACTN)

HSP 1 Score: 114 bits (284), Expect = 5.210e-28
Identity = 58/106 (54.72%), Postives = 74/106 (69.81%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSLD 106
            +IQ+G  GL+ AVEKFD  KGF+FSTYA+WW+ Q I  G+ANTGRTIR+P++    + RV RTRS+L   LGR PT +E+A    LPE KV   + +  VEP SLD
Sbjct:  102 LIQEGNLGLMHAVEKFDWRKGFKFSTYATWWIRQAITRGIANTGRTIRIPVHAGDTMTRVQRTRSRLEIELGRLPTTAELAREVDLPEDKVTETL-LYAVEPLSLD 206

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: UPI001D1105C7 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D1105C7)

HSP 1 Score: 112 bits (279), Expect = 2.590e-27
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSL 105
            ++Q+G  GL+ AVEKFD  KGF+FSTYA+WW+ Q I  G+ANTGRTIR+P++    + RV RTRS++   LGR PT +E+A+   LPE KV   + +   EP SL
Sbjct:   97 LVQEGNLGLIHAVEKFDWRKGFKFSTYATWWIRQAITRGIANTGRTIRIPVHAGDTMTRVQRTRSRMELELGRPPTTAELAVEVDLPEEKVVETL-LYAAEPLSL 200

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A7K0JWH3_9ACTN (RNA polymerase sigma factor n=1 Tax=Acidiferrimicrobium australe TaxID=2664430 RepID=A0A7K0JWH3_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 2.900e-26
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSL 105
            ++Q+G  GL+ AVEKFD  KGF+FSTYA+WW+ Q I  G+ANTGRT+RLP++   ++ RV + R +L   LGR PT +E+A    L E KV   +R +  EP SL
Sbjct:  118 LVQEGNLGLMHAVEKFDWRKGFKFSTYATWWIRQAITRGIANTGRTVRLPVHAGDLLTRVTKARGRLEGQLGRRPTVAELAADLELEEEKVTEILR-HAAEPLSL 221

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A2R4FVB9_9ACTN (RNA polymerase sigma factor n=3 Tax=Plantactinospora TaxID=673534 RepID=A0A2R4FVB9_9ACTN)

HSP 1 Score: 109 bits (272), Expect = 3.370e-26
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSLD 106
            +IQ+G  GL++AVEKFD  KG++FSTYA+WW+ Q I   +A+  RTIR+P++M   V R+ RTR  LA  LGR PT +E+A + G+PE +V   +  ++ EP SLD
Sbjct:  107 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRTRRDLATQLGREPTVAEVAAALGVPEFQVIELISYDR-EPVSLD 211

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A521GSB7_9BACT (RNA polymerase sigma factor SigA n=1 Tax=Candidatus Saccharibacteria bacterium TaxID=2026720 RepID=A0A521GSB7_9BACT)

HSP 1 Score: 110 bits (275), Expect = 3.470e-26
Identity = 52/107 (48.60%), Postives = 77/107 (71.96%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSLDA 107
            +IQ+G  GL++AVEKFDP+KGF+FSTYA+WW+ Q I   +A+  RTIR+P++M   + ++ RT+ +L   L R PT +EIA +  + EAKV+H M++ K +  SLDA
Sbjct:  175 LIQEGNTGLLRAVEKFDPDKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLRTQRRLTQELNREPTNAEIAQAMEIDEAKVEHIMKI-KQDISSLDA 280

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A6J6GXG4_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6GXG4_9ZZZZ)

HSP 1 Score: 107 bits (267), Expect = 3.570e-26
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSL 105
            +IQ+G  GL+ AVEKFD  KGF+FSTYA+WW+ Q I  G+ANTGRTIRLP++    + R+ + RS+L    GR PT  E+A    +PE KV   +R    EP SL
Sbjct:   25 LIQEGNLGLMHAVEKFDWRKGFKFSTYATWWIRQAITRGIANTGRTIRLPVHAGDTLARLQKARSRLELKFGRQPTLRELAAEVEMPEDKVTEALRF-AAEPLSL 128

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: UPI00101BA7D1 (RNA polymerase sigma factor RpoD n=1 Tax=Candidatus Nanosyncoccus alces TaxID=2171997 RepID=UPI00101BA7D1)

HSP 1 Score: 109 bits (272), Expect = 3.870e-26
Identity = 59/133 (44.36%), Postives = 82/133 (61.65%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSLDAKAWTRTANEDEHSNYRVEDTVRSTQE 133
            +IQ+G  GL++AVEKFDP+KGF+FSTYA+WWV Q I   +A+  RTIR+P++M   + +V RT  KL   L R PT  EIA +  +   K+ + MR+ K +  SLDA       +ED      VED  R++ E
Sbjct:  113 LIQEGNTGLLRAVEKFDPDKGFKFSTYATWWVRQAITRAIADQARTIRIPVHMVETINKVLRTTRKLTSELNREPTNEEIAKALDMEPDKIDYVMRI-KQDIASLDASVGREGDDEDSVLGDFVEDEERASPE 244

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A1G1WBB9_9BACT (RNA polymerase sigma factor (Fragment) n=1 Tax=Candidatus Woykebacteria bacterium RBG_16_39_9b TaxID=1802595 RepID=A0A1G1WBB9_9BACT)

HSP 1 Score: 107 bits (266), Expect = 3.900e-26
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSLDA 107
            +IQ+G  GL++AVEKFD  KG++FSTYA+WW+ Q I   +A+  RTIR+P++M   + R  RT  KL   LGR PTA+EI    G+ E KV+  ++V++ EP SL+A
Sbjct:   17 LIQEGNIGLIRAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRFIRTSRKLMQELGREPTANEIGREMGIEEDKVREIIKVSQ-EPTSLEA 122

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BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Match: A0A3L7XPC2_9CHLR (RNA polymerase sigma factor SigA n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3L7XPC2_9CHLR)

HSP 1 Score: 110 bits (275), Expect = 4.040e-26
Identity = 50/106 (47.17%), Postives = 75/106 (70.75%), Query Frame = 0

Query:    1 MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLPMNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKVEPYSLD 106
            +IQ+G  GL++AV+KFD  +GF+FSTYA+WW+ Q +   +A+ GRTIR+P++M+  + R+ RT  +L   LGR+PT  EIA   G+   KV+H MRV++  P SL+
Sbjct:  189 LIQEGNIGLIRAVKKFDYRRGFKFSTYATWWIRQAVTRAIADQGRTIRVPVHMYEQINRLTRTSRQLVQELGRDPTTDEIAEELGVTARKVEHIMRVSQ-RPLSLE 293

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot

BLAST of mRNA_H-elongata_contig88970.16406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L6L8_9PHAE	9.160e-47	57.14	RNA_pol_sigma70 domain-containing protein n=2 Tax=...	[more]
A0A431ILK6_9ACTN	5.210e-28	54.72	RNA polymerase sigma factor n=1 Tax=Acidimicrobiia...	[more]
UPI001D1105C7	2.590e-27	51.43	sigma-70 family RNA polymerase sigma factor n=1 Ta...	[more]
A0A7K0JWH3_9ACTN	2.900e-26	49.52	RNA polymerase sigma factor n=1 Tax=Acidiferrimicr...	[more]
A0A2R4FVB9_9ACTN	3.370e-26	49.06	RNA polymerase sigma factor n=3 Tax=Plantactinospo...	[more]
A0A521GSB7_9BACT	3.470e-26	48.60	RNA polymerase sigma factor SigA n=1 Tax=Candidatu...	[more]
A0A6J6GXG4_9ZZZZ	3.570e-26	50.48	Unannotated protein n=1 Tax=freshwater metagenome ...	[more]
UPI00101BA7D1	3.870e-26	44.36	RNA polymerase sigma factor RpoD n=1 Tax=Candidatu...	[more]
A0A1G1WBB9_9BACT	3.900e-26	48.60	RNA polymerase sigma factor (Fragment) n=1 Tax=Can...	[more]
A0A3L7XPC2_9CHLR	4.040e-26	47.17	RNA polymerase sigma factor SigA n=1 Tax=Chlorofle...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 59..127 e-value: 1.4E-9 score: 37.9
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 2..44 e-value: 3.0E-10 score: 39.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 49..131 e-value: 3.6E-13 score: 51.8
None	No IPR available	GENE3D	1.10.601.10		coord: 1..48 e-value: 4.2E-21 score: 77.9
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 1..129
None	No IPR available	PANTHER	PTHR30603:SF45	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 1..129
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 44..97
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 1..41

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig88970	contig	H-elongata_contig88970:1167..2368 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig88970.16406.1	mRNA_H-elongata_contig88970.16406.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig88970 1149..2368 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig88970.16406.1 ID=prot_H-elongata_contig88970.16406.1|Name=mRNA_H-elongata_contig88970.16406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MIQDGTAGLVKAVEKFDPEKGFRFSTYASWWVHQGIHTGLANTGRTIRLP
MNMHAMVCRVARTRSKLADMLGRNPTASEIAISTGLPEAKVQHCMRVNKV
EPYSLDAKAWTRTANEDEHSNYRVEDTVRSTQEQVPL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007624	RNA_pol_sigma70_r3
IPR007627	RNA_pol_sigma70_r2
IPR036388	WH-like_DNA-bd_sf
IPR013324	RNA_pol_sigma_r3/r4-like
IPR013325	RNA_pol_sigma_r2