prot_H-elongata_contig88673.16382.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig88673.16382.1
Unique Name	prot_H-elongata_contig88673.16382.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	159

Homology

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 8.940e-33
Identity = 68/170 (40.00%), Postives = 104/170 (61.18%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSE----SGNLY-SFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 159
            +V+VPG+G NLFSV       + ++F  +NPRLE  +  VP++ +    +G +  S  + LGA+       G +   LA+  V  A +WHRR+GH++ + LD+LR++  +GI + G + DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG KY +K
Sbjct:  489 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATK 657

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.710e-32
Identity = 67/170 (39.41%), Postives = 104/170 (61.18%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSE----SGNLY-SFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 159
            +++VPG+G NLFSV       + ++F  +NPRLE  +  VP++ +    +G +  S  + LGA+       G +   LA+  V  A +WHRR+GH++ + LD+LR++  +GI + G + DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG KY +K
Sbjct:  489 VMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATK 657

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.550e-31
Identity = 67/171 (39.18%), Postives = 100/171 (58.48%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRS------ESGNLYSFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 159
            +++VPG+G NLFSV     K + T+F  +NPRLE  +V  P+++          +YS  + LG +       G +   LA+  V +A +WHRR+GH++ + LD+LRK    G+ + G +  C VC +GK+ Q  HPK A + V RPFQ    D + PFTP A+GG+KY +K
Sbjct:  415 VILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALK-VESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLSPFTPTALGGSKYATK 581

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.850e-31
Identity = 66/170 (38.82%), Postives = 101/170 (59.41%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSE----SGNLY-SFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 159
            +V+VPG+G NLFSV       + ++F  +NPRLE  +  VP++ +    +G +  S  + LGA+       G +   LA+  V  A +WHRR+GH++ + LD+LR++  +GI + G + DC  C +GK+ Q  HPK A + V+ PFQL + D  GPFT   +GG KY +K
Sbjct:  394 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATK 562

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.040e-28
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 0

Query:    2 IVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRS------ESGNLYSFVLDLGAD-------GYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 159
            +++VPG+G NLFSV     K + T+F  +NPRLE  +V  P+++          +YS  + LG +       G +   LA+  V +A +WHRR+G ++ + LD+LRK+    + + G + DC VC +GK+ Q  HPK A + V RPFQ      + PFTP  +GG K  +K
Sbjct:  668 VILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALK-VESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFKNATK 837

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.420e-26
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 0

Query:   46 ESGNLYSFVLDLGADGYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 159
            E   LY F +DL   G     +A+  V +A +WHRR+GH+H + LDILRK  G G+ + G +S C VCAVG ++Q  HPK A++  +RPFQL   DLMGPF+P A+GG  YI K
Sbjct:  239 ECDELYHFTMDLPETG-EISGVAL-PVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKK 350

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.230e-23
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 0

Query:    4 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDLGADGYSAKELAMN------------------------------AVANAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAIGGNKYISK 159
            VVPG+GRN+FS   + K  +  + +  NP L     T+PL+ +  ++    +D+     S +  A                                A  NA  WHR L HL+ + +++LRK+   G+ F  +++ C +CA+ K++QLAHP+  N +   P QL Y D MG  TP+A GG  Y+SK
Sbjct:  207 VVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSK 392

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.110e-21
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = 0

Query:    4 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDL----GADGYSAKELA----------MNAVA----NAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVAI---GGNKYISK 159
            +VPG+GRN+FS  +  KK +  + +   P L      +PL  +  +     LD+           K L            NAV     +A  WHRRLGHL+A+ LDILRK  GTG+ +  ++S CGVC + K +Q  HPK +  +++RP QL     MGP  P A    G   Y+ K
Sbjct:  242 IVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRK 418

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BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.950e-20
Identity = 58/165 (35.15%), Postives = 83/165 (50.30%), Query Frame = 0

Query:    4 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDL----GADGYSAKELA----------MNAVA----NAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 150
            +VPG+GRN+FS  +  KK +  + +   P L      +PL  +  +     LD+           K L            NAV     +A  WHRRLGHL+A+ LDIL K  GT + +  ++S CGVC + K +Q  +PK +  +++RP QL   D MGP TP A
Sbjct:   60 IVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPA 224

[Close]

BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Match: A0A6H5JWA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.590e-20
Identity = 59/165 (35.76%), Postives = 83/165 (50.30%), Query Frame = 0

Query:    4 VVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNLYSFVLDL----GADGYSAKELA----------MNAVA----NAQVWHRRLGHLHAQGLDILRKRYGTGITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA 150
            +VPG+GRN+FS  +  KK +  + +   PRL      +PL  +  +     LD+           K L            NAV     +A  WHRRLGHL+A+ LDILRK  GTG+ +  ++S CGVC + K +Q  H K +  +++RP QL     MGP  P A
Sbjct:  235 IVPGLGRNIFSPTSLLKKGLRCVVEESTPRLTIQGNVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHLKQSTRELSRPGQLVVIGNMGPVNPPA 399

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot

BLAST of mRNA_H-elongata_contig88673.16382.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KJN3_9PHAE	8.940e-33	40.00	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5J842_9PHAE	1.710e-32	39.41	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5J9Q7_9PHAE	6.550e-31	39.18	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5JYB5_9PHAE	6.850e-31	38.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVF6_9PHAE	6.040e-28	36.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1J1_9PHAE	2.420e-26	49.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JYD3_9PHAE	2.230e-23	31.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMG5_9PHAE	3.110e-21	35.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9M6_9PHAE	1.950e-20	35.15	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5JWA3_9PHAE	2.590e-20	35.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 71..118 e-value: 5.6E-7 score: 29.3
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 52..156
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 52..156

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig88673	contig	H-elongata_contig88673:2181..2657 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig88673.16382.1	mRNA_H-elongata_contig88673.16382.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig88673 2181..2657 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig88673.16382.1 ID=prot_H-elongata_contig88673.16382.1|Name=mRNA_H-elongata_contig88673.16382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
DIVVVPGIGRNLFSVITEPKKSIVTIFDFENPRLEEFNVTVPLRSESGNL
YSFVLDLGADGYSAKELAMNAVANAQVWHRRLGHLHAQGLDILRKRYGTG
ITFEGAISDCGVCAVGKAQQLAHPKTANHKVNRPFQLCYGDLMGPFTPVA
IGGNKYISK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom
IPR039537	Retrotran_Ty1/copia-like