prot_H-elongata_contig88606.16379.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88606.16379.1
Unique Nameprot_H-elongata_contig88606.16379.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: D7G4F2_ECTSI (5'-3' exoribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F2_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.360e-55
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKV 106
            RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAA+L EE RQ+MKEMG+KVPPK+KPAWDSNIITPGT FMHKLS YLRFYVQDRVNRDKAWQNIKV
Sbjct:   87 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGVKVPPKAKPAWDSNIITPGTEFMHKLSRYLRFYVQDRVNRDKAWQNIKV 192          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.780e-55
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKV 106
            RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAA+L EE RQ+MKEMGMKVPPK+KPAWDSNIITPGT FMHKLS YLRFYVQDRVNRDKAWQNIKV
Sbjct:   87 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGMKVPPKAKPAWDSNIITPGTEFMHKLSRYLRFYVQDRVNRDKAWQNIKV 192          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A7R9VJU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VJU7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.490e-43
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 108
            RLF AVRPR+LLYLAIDGVAPRAKMNQQRSRRFRSAQEA E  ++ E+IR++M ++G KVPPK   AWDSN+ITPGT FM  LS ++RFY++ R++ D AW NIKV +
Sbjct:   43 RLFRAVRPRKLLYLAIDGVAPRAKMNQQRSRRFRSAQEAREGREVEEQIRKTMADVGQKVPPKGGDAWDSNVITPGTKFMLGLSDFIRFYIRKRISTDPAWSNIKVIF 150          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A7S1UB78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB78_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.270e-42
Identity = 73/108 (67.59%), Postives = 91/108 (84.26%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 108
            RLF+AVRPR+LL+LAIDGVAPRAKMNQQRSRRF+S +E  E  +  EE+RQ M  MG+KVPPK+KP WDSN+ITPGT FM KL+I+LR+Y+ DR N++ AW+NIKV +
Sbjct:  100 RLFAAVRPRKLLFLAIDGVAPRAKMNQQRSRRFKSVKEMREGQEAMEEVRQDMMAMGLKVPPKAKPGWDSNVITPGTQFMDKLAIFLRYYILDRCNKNPAWKNIKVVF 207          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A8K1CPD8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPD8_PYTOL)

HSP 1 Score: 145 bits (365), Expect = 5.450e-38
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 108
            RLF+AVRPRR+LYLAIDGVAPRAKMNQQR+RRFRSAQEAE+  ++ +E    M+ MG KVP K    WDSN+ITPGT FM KL+ Y+RFY++DR+N + AW++IKV +
Sbjct:   89 RLFAAVRPRRVLYLAIDGVAPRAKMNQQRARRFRSAQEAEQRKEIEKEALDYMRAMGHKVPEKQSEGWDSNVITPGTKFMSKLAKYMRFYIRDRINNNPAWKSIKVIF 196          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A5D6XP65_9STRA (5'-3' exoribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP65_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.570e-37
Identity = 70/108 (64.81%), Postives = 90/108 (83.33%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 108
            RL +AVRPRR+LYLAIDGVAPRAKMNQQR+RRFR+AQEAE+  ++ +E  + M+ +G KVP K + AWDSN+ITPGT FM KL+ YLRFYV+DR+N + AW++IKV +
Sbjct:   69 RLVAAVRPRRVLYLAIDGVAPRAKMNQQRARRFRAAQEAEQRQEVEKEALEYMRALGHKVPGKQEKAWDSNVITPGTKFMSKLAKYLRFYVRDRINNNPAWKSIKVIF 176          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A7S0A1E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A1E8_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.800e-37
Identity = 69/108 (63.89%), Postives = 87/108 (80.56%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 108
            RLF A RPR+LLYLAIDGVAPRAKMNQQRSRRFRSAQEA+E  ++ + ++++M   GM +P  S  AWDSN+ITPGT FM KLS YL+FY++ R++ DKAW+ IKV +
Sbjct:   89 RLFRAARPRKLLYLAIDGVAPRAKMNQQRSRRFRSAQEADEKKEIEDRVKKNMSNEGMSLPSSSGDAWDSNVITPGTKFMLKLSEYLKFYIRKRMSEDKAWKTIKVIF 196          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A1W0A9W7_9STRA (5'-3' exoribonuclease (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9W7_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.890e-37
Identity = 71/108 (65.74%), Postives = 90/108 (83.33%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 108
            RL + VRPRRLLY+AIDGVAPRAKMNQQRSRRFRSAQ+A+E  ++ EE R+ MK MG ++PPK+ P WDSN+ITPGT FM KL+ ++RFYV+DR+N   AW++IKV +
Sbjct:  856 RLVACVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQDAKERLEIEEEAREYMKLMGHEIPPKTTP-WDSNVITPGTKFMAKLAKFMRFYVRDRINSCPAWKDIKVLF 962          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A3R7HZP6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HZP6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 6.590e-37
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKV 106
            RL +AVRPRR+LYLAIDGVAPRAKMNQQR+RRFR+AQEAE+  ++ +E  + M  MG KVP K + AWDSN+ITPGT FM KL+ YLRFY++DRVN + AW++IK+
Sbjct:   89 RLVAAVRPRRVLYLAIDGVAPRAKMNQQRARRFRAAQEAEQRMEVEKEALEYMSAMGHKVPSKQEKAWDSNVITPGTKFMAKLAKYLRFYIRDRVNNNAAWKSIKI 194          
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Match: A0A3R6WQE1_9STRA (5'-3' exoribonuclease n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WQE1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 8.010e-37
Identity = 71/108 (65.74%), Postives = 89/108 (82.41%), Query Frame = 0
Query:    1 RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIRQSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKAWQNIKVCY 108
            RL + VRPRRLLY+AIDGVAPRAKMNQQRSRRFRSAQEA++ A++ +E+R+ M+ +G K PPK  P WDSN+ITPGT FM KLS Y+RFYV+DR+N   AW++ KV +
Sbjct:   89 RLVACVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAKQHAEVDKEVREYMETLGQKPPPKQTP-WDSNVITPGTKFMAKLSKYMRFYVRDRMNNCPAWKHFKVVF 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88606.16379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4F2_ECTSI2.360e-5592.455'-3' exoribonuclease n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JF35_9PHAE5.780e-5593.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9VJU7_9STRA1.490e-4367.59Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1UB78_9STRA1.270e-4267.59Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8K1CPD8_PYTOL5.450e-3864.81Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XP65_9STRA2.570e-3764.815'-3' exoribonuclease n=1 Tax=Pythium brassicum Ta... [more]
A0A7S0A1E8_9STRA4.800e-3763.89Hypothetical protein (Fragment) n=1 Tax=Rhizosolen... [more]
A0A1W0A9W7_9STRA4.890e-3765.745'-3' exoribonuclease (Fragment) n=1 Tax=Thraustot... [more]
A0A3R7HZP6_9STRA6.590e-3766.04Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3R6WQE1_9STRA8.010e-3765.745'-3' exoribonuclease n=1 Tax=Aphanomyces invadans... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availableGENE3D3.30.110.100coord: 19..109
e-value: 9.7E-23
score: 83.2
NoneNo IPR availablePANTHERPTHR12341:SF415'-3' EXORIBONUCLEASE 2coord: 1..106
IPR004859Putative 5-3 exonucleasePFAMPF03159XRN_Ncoord: 1..108
e-value: 1.4E-37
score: 129.4
IPR0270735'-3' exoribonucleasePANTHERPTHR123415'->3' EXORIBONUCLEASEcoord: 1..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88606contigH-elongata_contig88606:375..2092 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88606.16379.1mRNA_H-elongata_contig88606.16379.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88606 375..2092 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88606.16379.1 ID=prot_H-elongata_contig88606.16379.1|Name=mRNA_H-elongata_contig88606.16379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
RLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAADLREEIR
QSMKEMGMKVPPKSKPAWDSNIITPGTLFMHKLSIYLRFYVQDRVNRDKA
WQNIKVCYRQPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004859Put_53exo
IPR0270735_3_exoribonuclease