prot_H-elongata_contig88370.16362.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88370.16362.1
Unique Nameprot_H-elongata_contig88370.16362.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length252
Homology
[Close]
BLAST of mRNA_H-elongata_contig88370.16362.1 vs. uniprot
Match: A0A6H5KU46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU46_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.030e-16
Identity = 120/293 (40.96%), Postives = 152/293 (51.88%), Query Frame = 0 
Query:    1 QVPLPPGVLPPXXXXXXXXXXXXXXXXXXXXXXXXXREETAITETAHRLLPLTSLPERQRIAQDLVATHTTA---VPMSPELIPAATPAGPLLFM---PWSAST------DDDPGWLSGPGAIM-PVAVRLHHSVGLSSRMPLAQQPRASQTSVSPASPISSPLLVPSVEDLLMGE--EEEEQARQSLP----EPEGVN---DALEESQTRDPFEGVQL-WLEGARGGDNSVAGC--------------FPAATETPSTVE--RGLL--SNDVELLGDWAGDLMWSPLRTSSV 252
            +VPLPPGV+P XXXXXXXXXXXXXXXXXXXXXXXX     +     H +LP  SLPERQR+A+DLVA+   +   VP SPEL P ATPAGPLLF+   P S S+      +DDP WL   G I+ P A  +                + +Q  ++ A+         S+  LL+G+  EEEE+A  +LP    E  G     D   + Q RDPF GV++ WLE                          FP  +   +T+E  R +   +   ELLGD    LMW+PLRT SV
Sbjct:  331 KVPLPPGVVPXXXXXXXXXXXXXXXXXXXXXXXXXAPAAASEVTGPHGILPRLSLPERQRVAEDLVASPAPSHVLVPESPELAPTATPAGPLLFIAPPPASPSSNSPSSLEDDPEWLPHSGVIVSPAAAFVQQHQERXXXXXXXWXNQQNQLYLAGAAT--------SLTGLLLGDNQEEEEEAELALPVRRHESGGGEIDLDLSADCQDRDPFAGVEITWLENGXXXXXXXXXXXXXXXXXXXXAPTVFPLVSRDGTTMEQHRSVFPSAQSTELLGDADDALMWNPLRTPSV 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88370.16362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KU46_9PHAE6.030e-1640.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88370contigH-elongata_contig88370:1417..2172 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88370.16362.1mRNA_H-elongata_contig88370.16362.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88370 1417..2172 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88370.16362.1 ID=prot_H-elongata_contig88370.16362.1|Name=mRNA_H-elongata_contig88370.16362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
QVPLPPGVLPPKRKKGAAAARTAADAAAAAVAAASNREETAITETAHRLL
PLTSLPERQRIAQDLVATHTTAVPMSPELIPAATPAGPLLFMPWSASTDD
DPGWLSGPGAIMPVAVRLHHSVGLSSRMPLAQQPRASQTSVSPASPISSP
LLVPSVEDLLMGEEEEEQARQSLPEPEGVNDALEESQTRDPFEGVQLWLE
GARGGDNSVAGCFPAATETPSTVERGLLSNDVELLGDWAGDLMWSPLRTS
SV
back to top