prot_H-elongata_contig88241.16354.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88241.16354.1
Unique Nameprot_H-elongata_contig88241.16354.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: Q9AYC5_ORYSJ (Putative retroelement pol polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q9AYC5_ORYSJ)

HSP 1 Score: 50.8 bits (120), Expect = 9.220e-6
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 0
Query:    9 WAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 62
            W EA+  A  + ++    SLD  T PYE WYGRRPT +++  F  VGY++ +KP
Sbjct:  586 WGEAVVAAVYVLSKSPMKSLDGVT-PYEAWYGRRPTVEHLRVFECVGYVKTAKP 638          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A0J7NGT3_LASNI (Retrovirus-related gag-pol polyprotein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NGT3_LASNI)

HSP 1 Score: 50.1 bits (118), Expect = 1.740e-5
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 0
Query:    3 GKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 62
            G S+  WA+A+A AC + NRC SSSL   T PYE W G  P  +++  FG   ++  + P
Sbjct:  626 GLSSMFWADAVATACHIRNRCPSSSLGGIT-PYEKWTGELPKLEHLRTFGAKVFVLDNNP 684          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 3.130e-5
Identity = 24/59 (40.68%), Postives = 32/59 (54.24%), Query Frame = 0
Query:    4 KSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 62
            K+++LWAEAM +AC+  N    S+     SPYE+WYG  P      PF    Y R  +P
Sbjct:  226 KTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRP 283          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A2N9GKV0_FAGSY (Uncharacterized protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GKV0_FAGSY)

HSP 1 Score: 49.3 bits (116), Expect = 3.250e-5
Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 0
Query:    8 LWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 62
            LW EA+  AC + NR  S  + S  SPYELW GR+P  + +  +G + Y R   P
Sbjct:  631 LWGEALLTACHVHNRVLSKKIQS--SPYELWNGRKPNLNYLKVWGCIAYFRVPDP 683          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A2N9G3S3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G3S3_FAGSY)

HSP 1 Score: 48.9 bits (115), Expect = 4.430e-5
Identity = 23/55 (41.82%), Postives = 30/55 (54.55%), Query Frame = 0
Query:    8 LWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 62
            LW EA+  AC + NR  S  + S  SPYELW GR+P    +  +G + Y R   P
Sbjct:  636 LWGEALLTACHVHNRVLSKKIQS--SPYELWNGRKPNLSYLKVWGCIAYFRVPDP 688          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A2N9HL40_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HL40_FAGSY)

HSP 1 Score: 48.9 bits (115), Expect = 4.440e-5
Identity = 23/55 (41.82%), Postives = 30/55 (54.55%), Query Frame = 0
Query:    8 LWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 62
            LW EA+  AC + NR  S  + S  SPYELW GR+P    +  +G + Y R   P
Sbjct:  570 LWGEALLTACHVHNRVLSKKIQS--SPYELWNGRKPNLSYLKVWGCIAYFRVPDP 622          
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Match: A0A2N9HEX1_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HEX1_FAGSY)

HSP 1 Score: 48.9 bits (115), Expect = 4.480e-5
Identity = 23/55 (41.82%), Postives = 30/55 (54.55%), Query Frame = 0
Query:    8 LWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPPFGTVGYLRRSKP 62
            LW EA+  AC + NR  S  + S  SPYELW GR+P    +  +G + Y R   P
Sbjct: 2167 LWGEALLTACHVHNRVLSKKIQS--SPYELWNGRKPNLSYLKVWGCIAYFRVPDP 2219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88241.16354.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Q9AYC5_ORYSJ9.220e-644.44Putative retroelement pol polyprotein n=2 Tax=Oryz... [more]
A0A0J7NGT3_LASNI1.740e-541.67Retrovirus-related gag-pol polyprotein n=2 Tax=Las... [more]
A0A6H5KVR5_9PHAE3.130e-540.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GKV0_FAGSY3.250e-541.82Uncharacterized protein n=2 Tax=Fagus sylvatica Ta... [more]
A0A2N9G3S3_FAGSY4.430e-541.82Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9HL40_FAGSY4.440e-541.82Integrase catalytic domain-containing protein n=2 ... [more]
A0A2N9HEX1_FAGSY4.480e-541.82Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88241contigH-elongata_contig88241:1705..1890 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88241.16354.1mRNA_H-elongata_contig88241.16354.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88241 1357..1890 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88241.16354.1 ID=prot_H-elongata_contig88241.16354.1|Name=mRNA_H-elongata_contig88241.16354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MEGKSNRLWAEAMAYACDMWNRCTSSSLDSDTSPYELWYGRRPTFDNIPP
FGTVGYLRRSKP
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