prot_H-elongata_contig88232.16353.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig88232.16353.1
Unique Nameprot_H-elongata_contig88232.16353.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length177
Homology
[Close]
BLAST of mRNA_H-elongata_contig88232.16353.1 vs. uniprot
Match: A0A6H5KWX2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX2_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.040e-58
Identity = 116/171 (67.84%), Postives = 138/171 (80.70%), Query Frame = 0 
Query:    5 RETLLVLDDVWDAVVVEAFETIGLSLLVTTREPLIARLATP-SPSGRKRLIGPLGPLSPEEATAAAAKGAATRRIPHKEAGQLLDRTGRCPLAVGVVASTLKQALTPLDWTNTYARVRKTYIGLQKQREKDSDGESIGPKEETEDRITASIAAGLSNMPEENQV---CLCL 171
            R TLLVLDDVW+A VVEAFET+GLSLLVTTREPLIAR+A+P S +G  RLIGPLGPLS  EA +AAAK AATRR+P KEA QLLD+TGRCPLAVGVVASTLKQA  PLDW +T ++V+KT+ GL ++R   +       +++ EDR+TASIAAGLSNMPEENQ+    LC+
Sbjct:  119 RSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASPHSAAGVSRLIGPLGPLSDAEAISAAAKAAATRRVPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPLDWVSTSSKVKKTFAGLHRRRRVTTST----AEQDAEDRVTASIAAGLSNMPEENQMLYSALCI 285
[Close]
BLAST of mRNA_H-elongata_contig88232.16353.1 vs. uniprot
Match: D7G1G8_ECTSI (Kinesin light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G8_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 4.620e-58
Identity = 113/171 (66.08%), Postives = 136/171 (79.53%), Query Frame = 0 
Query:    5 RETLLVLDDVWDAVVVEAFETIGLSLLVTTREPLIARLATP-SPSGRKRLIGPLGPLSPEEATAAAAKGAATRRIPHKEAGQLLDRTGRCPLAVGVVASTLKQALTPLDWTNTYARVRKTYIGLQKQREKDSDGESIGPKEETEDRITASIAAGLSNMPEENQV---CLCL 171
            R TLLVLDDVW+A VVEAFET+GLSLLVTTREPLIAR+A+  + +G  RLIGPLGPLS  EAT+AAAK AATRR P KEA QLLD+TGRCPLAVGVVASTLKQA  PLDW +T ++V+KT+ GL ++R      ++   +++ EDR+TASIAAG SNMPEE Q+    LC+
Sbjct:   46 RSTLLVLDDVWEAKVVEAFETVGLSLLVTTREPLIARMASSHNAAGVSRLIGPLGPLSGAEATSAAAKAAATRRAPPKEAKQLLDKTGRCPLAVGVVASTLKQAQGPLDWVSTSSKVKKTFAGLHRRRRV----KASTAEQDAEDRVTASIAAGFSNMPEETQMLYSALCI 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88232.16353.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWX2_9PHAE1.040e-5867.84NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G1G8_ECTSI4.620e-5866.08Kinesin light chain n=1 Tax=Ectocarpus siliculosus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002182NB-ARCPFAMPF00931NB-ARCcoord: 4..133
e-value: 6.2E-6
score: 25.6
NoneNo IPR availableGENE3D3.40.50.300coord: 1..45
e-value: 1.0E-7
score: 33.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 5..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88232contigH-elongata_contig88232:219..1381 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88232.16353.1mRNA_H-elongata_contig88232.16353.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig88232 219..1381 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig88232.16353.1 ID=prot_H-elongata_contig88232.16353.1|Name=mRNA_H-elongata_contig88232.16353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MFSARETLLVLDDVWDAVVVEAFETIGLSLLVTTREPLIARLATPSPSGR
KRLIGPLGPLSPEEATAAAAKGAATRRIPHKEAGQLLDRTGRCPLAVGVV
ASTLKQALTPLDWTNTYARVRKTYIGLQKQREKDSDGESIGPKEETEDRI
TASIAAGLSNMPEENQVCLCLQLSLL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002182NB-ARC
IPR027417P-loop_NTPase