prot_H-elongata_contig87456.16282.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87456.16282.1
Unique Nameprot_H-elongata_contig87456.16282.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.050e-24
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 0
Query:    1 MTRLSATVGVFATGMVSAQHANYSLCMEFLEGLASVGGEGKRPRIRARLLAHASVQEFKARWNLPIYFQLR 71
            MTRLS+   +FATGMV+AQH+N+ LCMEFLEGLA++ G  KRPRIR RLL   SV EFKARWNLPIYFQLR
Sbjct:  496 MTRLSS---IFATGMVAAQHSNFVLCMEFLEGLAAIAGGEKRPRIRHRLLGQPSVAEFKARWNLPIYFQLR 563          
BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.720e-23
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    1 MTRLSATVGVFATGMVSAQHANYSLCMEFLEGLASVGGEGKRPRIRARLLAHASVQEFKARWNLPIYFQLR 71
            MTRLS+   +FATGMV+AQH+N+ LCMEFLEGLA++ G  KR RIR RLL   SV EFKARWNLPIYFQLR
Sbjct:  503 MTRLSS---IFATGMVTAQHSNFMLCMEFLEGLAAIAGSEKRLRIRHRLLGQPSVAEFKARWNLPIYFQLR 570          
BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Match: A0A835ZA59_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA59_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.380e-7
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 0
Query:   10 VFATGMVSAQHANYSLCMEFLEGLASV--GGEGKRPRIRARLLAHASVQEFKARWNLPIYFQLR 71
            +FATG+    H NY+L       LA    GG  +    + RL AH +  +F+ARWNLP+YFQLR
Sbjct:  447 IFATGLADVFHRNYALSQALPRRLAEACSGGGREGGSAQQRLEAHPASADFRARWNLPVYFQLR 510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87456.16282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMA5_ECTSI2.050e-2473.24Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6H5JYJ6_9PHAE1.720e-2371.83Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
A0A835ZA59_9STRA2.380e-743.75Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..71
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87456contigH-elongata_contig87456:611..826 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87456.16282.1mRNA_H-elongata_contig87456.16282.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87456 608..826 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87456.16282.1 ID=prot_H-elongata_contig87456.16282.1|Name=mRNA_H-elongata_contig87456.16282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MTRLSATVGVFATGMVSAQHANYSLCMEFLEGLASVGGEGKRPRIRARLL
AHASVQEFKARWNLPIYFQLR*
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