prot_H-elongata_contig87451.16279.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig87451.16279.1
Unique Nameprot_H-elongata_contig87451.16279.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length170
Homology
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 7.340e-84
Identity = 119/162 (73.46%), Postives = 148/162 (91.36%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            +V +WD S +GPD +E DGRSY+SAVSEVI + S+TC+GRAK++MGEARMDIEDSEMGYLGY+ S+SYGLTWKVRGFC++K+N ++F++V+VYGNIY+SDIHHN+FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VY+N YHGIIAS+RCN
Sbjct:  153 KVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCN 314          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 1.160e-83
Identity = 118/162 (72.84%), Postives = 143/162 (88.27%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            +V SWD ST+ PD +ETDGRSYISA+SE+I +  ETC+G AK+ MGEARMDIE SE+GYLGY+ S+SYGLTWKVRGFC +K+N E+FD+V+VYGN+Y+SDIHH +FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHGIIAS+RCN
Sbjct:  156 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCN 317          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 2.080e-82
Identity = 118/162 (72.84%), Postives = 143/162 (88.27%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            +V SWD ST+ PD +ETDGRSYISA+SE+I +  ETC+G AK+ MGEARMDIE SE+GYLGY+ S+SYGLTWKVRGFC +K+N E+FD+V+VYGN+Y+SDIHH +FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHGIIAS+RCN
Sbjct:  156 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCN 317          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 2.630e-81
Identity = 116/162 (71.60%), Postives = 145/162 (89.51%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            +V +WD S + PD +E+DGRSYISAVSEVI +  +TC+GRAK++MGEARMDIE+SEM YLGY+ +++YGLTWKVRGFC++K N E+FD+V+VYGNIY+SDIHHN+FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN V+NN YHGIIAS+RCN
Sbjct:  127 KVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCN 288          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 3.650e-81
Identity = 118/162 (72.84%), Postives = 142/162 (87.65%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            +V SWD ST+ PD +ETDGRSYISAVSE++ +  ETC+G AK+ MGEARMDIE+SE+GYLG+  S+SYGLTWKVRGFC +K+N EIFD+V+VYGN+Y+SDIHH  FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHGIIAS+RCN
Sbjct:  160 KVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCN 321          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 9.380e-81
Identity = 115/164 (70.12%), Postives = 140/164 (85.37%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHG--IIASRRCN 170
            +V SWD ST+ PD +ETDGRSYISA+SE+I +  ETC+G AK+ MGEARMDIE SE+GYLGY+ S+SYGLTWKVRGFC +K+N E+FD+V+VYGN+Y+SDIHH +FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN YHG   + SRR N
Sbjct:   50 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGEAAVRSRRTN 213          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 7.870e-76
Identity = 110/154 (71.43%), Postives = 132/154 (85.71%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHG 162
            +V SWD ST+ PD +ETDGRSYISA+SE+I +  ETC+G AK+ MGEARMDIE+SE+GYLG+  S+SYGLTWKVRGFC +K+N  IFDEV+VYGN+Y+SDIHH  FG+YTYGHQQGDWR + M DN+GYGFDPHDDSD++TIHDN VYNN  HG
Sbjct:  159 KVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGNHG 312          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.640e-74
Identity = 106/162 (65.43%), Postives = 144/162 (88.89%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            +V  WD + +  D++ETDGRSYISAVSE++++ ++TC+G AK+ MGEARMDI +SEMGY+G++ S+SYGLTWKVRGFC +K+N E+FD+V+VYGNIY+S++HH +F +YTYGHQQGDWR +T+  N+GYG+DPHDDSD++TIHDNVVY+N++HGIIAS+RCN
Sbjct:  245 KVFGWDTTNNSYDMDETDGRSYISAVSEIVLDPTQTCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCN 406          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 239 bits (611), Expect = 2.860e-74
Identity = 111/162 (68.52%), Postives = 135/162 (83.33%), Query Frame = 0
Query:    9 QVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            +V +WD S +    +++ GRSYISAVSEVI ++ + CDGRAK +MGEARMDIEDSEM YLGY+ S+SYGLTWKVRG C + +N E+FD V+VYGNIY+SDIHHN+FG+YTYGH+QGDWR + M  NT YGFDPHDDSD++TIHDN VYNN  HGIIAS+RCN
Sbjct:  153 KVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCN 314          
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 9.760e-68
Identity = 98/135 (72.59%), Postives = 115/135 (85.19%), Query Frame = 0
Query:   36 EVIVNASETCDGRAKSDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDVYGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITIHDNVVYNNSYHGIIASRRCN 170
            E+I ++ E C+G+AK  MGEARMDIEDSEM YLGY  S+SYGLTWKVRGFC + +N E+FDEV+VYGNIY+SDIHHNHFG+YTYGH+QGDWR + M  N  YGFDPHDDSD++TIHDN VYNN  HGIIAS+RCN
Sbjct:    6 EIITDSKEKCNGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCN 140          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87451.16279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XAJ7_9PHAE7.340e-8473.46Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
D7FXE5_ECTSI1.160e-8372.84Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI2.080e-8272.84Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
Q7XAJ8_9PHAE2.630e-8171.60Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D7FXE4_ECTSI3.650e-8172.84Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KES9_9PHAE9.380e-8170.12MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
A0A6H5JU98_9PHAE7.870e-7671.43MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LD45_ECTSI1.640e-7465.43Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A8CEP1_SACJA2.860e-7468.52Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
Q7XAJ9_9PHAE9.760e-6872.59Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 99..120
e-value: 890.0
score: 7.6
coord: 145..167
e-value: 1.0
score: 18.4
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 2..170
e-value: 7.0E-47
score: 162.1
IPR039448Right handed beta helix domainPFAMPF13229Beta_helixcoord: 94..163
e-value: 7.6E-7
score: 29.1
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 79..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87451contigH-elongata_contig87451:915..2346 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87451.16279.1mRNA_H-elongata_contig87451.16279.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig87451 915..2346 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig87451.16279.1 ID=prot_H-elongata_contig87451.16279.1|Name=mRNA_H-elongata_contig87451.16279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MVVSQSTNQVISWDNSTSGPDVNETDGRSYISAVSEVIVNASETCDGRAK
SDMGEARMDIEDSEMGYLGYYASKSYGLTWKVRGFCLNKTNTEIFDEVDV
YGNIYNSDIHHNHFGIYTYGHQQGDWRNSTMRDNTGYGFDPHDDSDYITI
HDNVVYNNSYHGIIASRRCN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR012334Pectin_lyas_fold
IPR039448Beta_helix
IPR011050Pectin_lyase_fold/virulence