prot_H-elongata_contig8707.16258.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8707.16258.1
Unique Nameprot_H-elongata_contig8707.16258.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length498
Homology
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BLAST of mRNA_H-elongata_contig8707.16258.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 8.970e-139
Identity = 235/542 (43.36%), Postives = 299/542 (55.17%), Query Frame = 0 
Query:    1 CHACGA--SKKYRPTVSCNLCRKLYHPKCAGFEPQSRRYPPPDWVCPECPGGQRGPNDVEIHASLKGKGTATV--GSQPWCPVCFEDNRVPGRKK--SLDGGQKVPLAVASSGGKGGSTSAAAGRLPAAIPGGRKSFEAISSRG----------------------GGARGLLRTSGRVDVGAATSSSSATVKRRFSEEVTSPEIARNPPTPLGEPSLRGKTGLVEAVRSSRR--------PKSSPGGSFVRASNVICKTCKRR---GRLKSGKTCASCKQWWHANADCSAAARGNHPDASEVGKWVGGWRCQGCLDEWEDGLRTRTAAVVKAWAELEERRERRAKEFKIAKEAVMAESVGASRHGFAVDAVKVPPIPHPPAGILPFLDLECIQDTGFRLARITKDDCAFMGPDCVLAKVDLCWKHRIFTIIEGVFGPQVQPLMDFLEERKGLSCRISGKAATGESSSTMGDYRARLTDR-RDKPR----KDSPGTFFLDTPSGQTEVLNWLPTDPLMSEFIPGARRGGLQDHIRGDRCKFG 498
            C ACG   ++   P+ +C  CRKLYH  C G+  ++R+ PPPDW+CP CPGG+RGP+  ++H S+ GKGT     G+ PWCP+C  D+R+P  K    L+ G                               ++  E +S+ G                             RT G   +   TS S             +P    NPP        R +       R   R                       +C  CK++       SGKTC +C +WWH +  C  A         E G+WVGGWRC+ CL  WE GLR R A VV+AW + E RRER A   +    A  AES  A RHGF+V AV++PP+  PPAGILPFLD++ I+DTGFRLAR +++DC+FMGPDCV+AKVDLCWKHRIF I+EG F PQ+QPLMDFL+ERK L+C++SGKAA+GE+SSTMGDYR++L DR RD       KD+PGTFFLDT +GQ +VLNWLPTDPLM   IP A RGGL +HI G+RCKFG
Sbjct:  122 CEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSP-QVHLSVAGKGTVKQRKGNMPWCPICLRDDRLPNSKLVGRLNSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRLEVVSATGQDXXXXXXXXXXXXXXXXRRKASSCGAADRTMGETALSGVTSGSL--------NRGAAPREEENPPARQ----QRARQXXASTARGGGRNGXXXXXXXXXXXXXXXXXXXGTVCFKCKKKRSGSNKSSGKTCGTCGRWWHNSVHCCGAY-----GCPESGEWVGGWRCRHCLSLWEKGLRDRAAKVVEAWNDQEARRERDAPLHRETAAAAAAESKAARRHGFSVAAVEIPPVCCPPAGILPFLDVDAIKDTGFRLARFSREDCSFMGPDCVVAKVDLCWKHRIFAIVEGAFDPQIQPLMDFLQERKSLACKLSGKAASGEASSTMGDYRSKLADRIRDGKESAKAKDNPGTFFLDTTTGQADVLNWLPTDPLMKGLIPEAERGGLAEHIHGERCKFG 645
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8707.16258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI8.970e-13943.36PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 221..277
e-value: 7.6
score: 7.4
coord: 1..48
e-value: 6.0E-4
score: 29.1
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 1..47
e-value: 3.9E-8
score: 33.1
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 1..50
score: 9.428
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..70
e-value: 2.5E-7
score: 32.2
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 1..47
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 1..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8707contigH-elongata_contig8707:5648..9608 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8707.16258.1mRNA_H-elongata_contig8707.16258.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8707 5648..9608 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8707.16258.1 ID=prot_H-elongata_contig8707.16258.1|Name=mRNA_H-elongata_contig8707.16258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=498bp
CHACGASKKYRPTVSCNLCRKLYHPKCAGFEPQSRRYPPPDWVCPECPGG
QRGPNDVEIHASLKGKGTATVGSQPWCPVCFEDNRVPGRKKSLDGGQKVP
LAVASSGGKGGSTSAAAGRLPAAIPGGRKSFEAISSRGGGARGLLRTSGR
VDVGAATSSSSATVKRRFSEEVTSPEIARNPPTPLGEPSLRGKTGLVEAV
RSSRRPKSSPGGSFVRASNVICKTCKRRGRLKSGKTCASCKQWWHANADC
SAAARGNHPDASEVGKWVGGWRCQGCLDEWEDGLRTRTAAVVKAWAELEE
RRERRAKEFKIAKEAVMAESVGASRHGFAVDAVKVPPIPHPPAGILPFLD
LECIQDTGFRLARITKDDCAFMGPDCVLAKVDLCWKHRIFTIIEGVFGPQ
VQPLMDFLEERKGLSCRISGKAATGESSSTMGDYRARLTDRRDKPRKDSP
GTFFLDTPSGQTEVLNWLPTDPLMSEFIPGARRGGLQDHIRGDRCKFG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD