prot_H-elongata_contig86868.16241.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig86868.16241.1
Unique Nameprot_H-elongata_contig86868.16241.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
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BLAST of mRNA_H-elongata_contig86868.16241.1 vs. uniprot
Match: A0A836CJA3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.450e-13
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0 
Query:    6 VSSEEKPTDCLSCRVIGSTTMLGVSAYGIFTRAQTPATQRGHRAFLLGVSTLFAAAGIARAVWT 69
            +S    P DCLSC++IGS T LG+S Y      QTP  Q G+R F+   +  FA  GIARAVWT
Sbjct:    1 MSERPPPQDCLSCKIIGSCTFLGLSGYTFMHYLQTPKAQVGNRMFMAAAAVGFAGVGIARAVWT 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86868.16241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJA3_9STRA5.450e-1350.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..68
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 69..91
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 15..36
NoneNo IPR availableTMHMMTMhelixcoord: 49..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86868contigH-elongata_contig86868:501..958 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86868.16241.1mRNA_H-elongata_contig86868.16241.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig86868 500..1635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig86868.16241.1 ID=prot_H-elongata_contig86868.16241.1|Name=mRNA_H-elongata_contig86868.16241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MSEDNVSSEEKPTDCLSCRVIGSTTMLGVSAYGIFTRAQTPATQRGHRAF
LLGVSTLFAAAGIARAVWTDNDDRGDHPDKQHRGKETTHSS*
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