prot_H-elongata_contig8671.16231.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8671.16231.1
Unique Nameprot_H-elongata_contig8671.16231.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
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BLAST of mRNA_H-elongata_contig8671.16231.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.080e-31
Identity = 70/122 (57.38%), Postives = 83/122 (68.03%), Query Frame = 0 
Query:    2 WHTRKTHSSPDRKLT--TKTGSMTSLLHGVCWHRVVAEGAQILANPRSARATAVDSLVGGARWCMVDRESMLTVESASERMRGLAAFVGIPSEVPLVDAAECLFYDSRPRHIVPSPHRGPAA 121
            W TR       ++ +  +KT  M SLLHGV W RVVA+GAQILA  RSARA A  +L+G ARWC+VD ESM  VE ASERMR LAAF+ +P+ VPLV+ AE L + SRPRHI P   R P A
Sbjct: 1253 WRTRNAKEGGQKRTSASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMGTARWCLVDCESMSIVEDASERMRCLAAFLRVPAAVPLVEVAESLLFRSRPRHIAPLYPRAPGA 1374
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BLAST of mRNA_H-elongata_contig8671.16231.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.300e-28
Identity = 67/117 (57.26%), Postives = 75/117 (64.10%), Query Frame = 0 
Query:   19 TGSMTSLLHGVCWHRVVAEGAQILANPRSARATAVDSLVGGARWCMVDRESMLTVESASERMRG--------------LAAFVGIPSEVPLVDAAECLFYDSRPRHIVPSPHRGPAA 121
            T  M SLLHGV W RVVA+GAQILA  RSARA A  +L G ARWC+VD ESM  VE AS+RMR               LAAF+ +P+ VPLVD AE LF+ SRPRHI P   R P A
Sbjct: 1271 TDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAGTARWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAPLYPRAPGA 1387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8671.16231.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB47_ECTSI3.080e-3157.38SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE5.300e-2857.26SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8671contigH-elongata_contig8671:8639..9738 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8671.16231.1mRNA_H-elongata_contig8671.16231.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8671 8639..9738 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8671.16231.1 ID=prot_H-elongata_contig8671.16231.1|Name=mRNA_H-elongata_contig8671.16231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
RWHTRKTHSSPDRKLTTKTGSMTSLLHGVCWHRVVAEGAQILANPRSARA
TAVDSLVGGARWCMVDRESMLTVESASERMRGLAAFVGIPSEVPLVDAAE
CLFYDSRPRHIVPSPHRGPAA
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