prot_H-elongata_contig86689.16227.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig86689.16227.1
Unique Nameprot_H-elongata_contig86689.16227.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Match: A0A6H5JWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.340e-17
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0
Query:    3 SPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNHGGDCIKIMDEETGRVVHSRDVTW 73
            SPHE+F G + P  +LPF +P + R  RRTK+D QA PC++LN G NH    +K++   TGRVV++ +V+W
Sbjct:  363 SPHEMFTGEQGPFRVLPFFQPGFMREDRRTKLDDQATPCYYLNGGDNHPSGTVKVLKASTGRVVYTNNVSW 433          
BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Match: A0A6H5L0J9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.230e-15
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 0
Query:    3 SPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNHGGDCIKIMDEETGRVVHSRDVTW 73
            SPHE+  G + P  +LPF +P + R  RRTK+D QA  C++LN G NH    +K++ E TGRV ++ +V+W
Sbjct:  151 SPHEMLTGEQGPFRLLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVKVLQESTGRVAYTNNVSW 221          
BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Match: A0A6H5JEQ0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.950e-13
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 0
Query:    3 SPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNHGGDCIKIMDEETGRVVHSRDVT 72
            SPHE+F G + P  +LP  +P + R  RRTK+D QA P ++LN G NH    +K++   T RVVH+ +V+
Sbjct:  311 SPHEMFTGEQGPFRVLPLFQPGFMREDRRTKLDDQATPLYYLNGGDNHPNGTVKVLKASTNRVVHTNNVS 380          
BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME)

HSP 1 Score: 49.3 bits (116), Expect = 7.010e-5
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 0
Query:    3 SPHEVFFGGRPPMPILPF--CKPAYHRVPR--RTKMDHQARPCFFLNFGYNHGGDCIKIMDEETGRVVHSRDV 71
            +P E+FF  +P +  L    CK AY  +P+  R K+D++ R C F+  GY+      ++++E TG+++ SRD+
Sbjct:  525 TPFELFFDKKPDISHLRVYGCK-AYAHIPKQMRLKLDNKTRECIFV--GYSQESKAYRLLEENTGKILTSRDI 594          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86689.16227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JWT4_9PHAE4.340e-1747.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0J9_9PHAE3.230e-1545.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JEQ0_9PHAE1.950e-1344.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6V7M0T8_9HYME7.010e-534.25Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86689contigH-elongata_contig86689:1..243 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86689.16227.1mRNA_H-elongata_contig86689.16227.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig86689 1..243 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig86689.16227.1 ID=prot_H-elongata_contig86689.16227.1|Name=mRNA_H-elongata_contig86689.16227.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MLSPHEVFFGGRPPMPILPFCKPAYHRVPRRTKMDHQARPCFFLNFGYNH
GGDCIKIMDEETGRVVHSRDVTWQKPREPFT
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