prot_H-elongata_contig86630.16222.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig86630.16222.1
Unique Nameprot_H-elongata_contig86630.16222.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length169
Homology
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BLAST of mRNA_H-elongata_contig86630.16222.1 vs. uniprot
Match: D8LLB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB0_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 2.510e-57
Identity = 107/160 (66.88%), Postives = 120/160 (75.00%), Query Frame = 0 
Query:   14 GGAAAVGSGYGGEIPPGVIPGSNVSVLPSFMDDLKTRACMPVRTVVEPALAAYSVNGGTNAPGRDRGRSGGRGGRGVKRKA----RVGVEPVYKFRLRGRIGRGGRVMWDRVPVKGAHPLRDDGLADPEEAPLVVHSTYVQFPIKPPSAHILHPPMVNLN 169
            GG A+VG   GG    G+IPGS+V+VLPSFMDDLKTR  +PVRTVVEPALA Y+  GG +A G                      RVGVEPVYKFRLRGRIGRGGRV+WDRVPV+GA P R+DGLADPEEAP+VVHS+YVQFP KPPSAH+LHPPMVNLN
Sbjct:  286 GGVASVGEDGGGSF--GIIPGSHVTVLPSFMDDLKTRESIPVRTVVEPALAVYTALGGRDAKGXXXXXXXXXXXXXXXXXXXXXXRVGVEPVYKFRLRGRIGRGGRVIWDRVPVRGAVPAREDGLADPEEAPVVVHSSYVQFPFKPPSAHVLHPPMVNLN 443
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BLAST of mRNA_H-elongata_contig86630.16222.1 vs. uniprot
Match: A0A835YT95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT95_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.860e-8
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 0 
Query:   34 GSNVSVLPSFMDDLKTRACMPVRTVVEPALAAYSVNGGTNAPGRDRGRSGGRGGRGVKRKARVGVEPVYKFRLRGRIGRGGRVMWDRVPV 123
            G + ++LPSFMD+   R    +   VEPAL A++V                   RG+        EPV KFR RGRIGRGGRV++DRVPV
Sbjct:  334 GEDTALLPSFMDNFMNRTKASMSGRVEPALPAFTV-------------------RGI-------CEPVTKFRCRGRIGRGGRVVFDRVPV 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86630.16222.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLB0_ECTSI2.510e-5766.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT95_9STRA6.860e-842.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86630contigH-elongata_contig86630:1484..2342 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86630.16222.1mRNA_H-elongata_contig86630.16222.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig86630 1484..2342 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig86630.16222.1 ID=prot_H-elongata_contig86630.16222.1|Name=mRNA_H-elongata_contig86630.16222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
EGEGVQGGAHGSEGGAAAVGSGYGGEIPPGVIPGSNVSVLPSFMDDLKTR
ACMPVRTVVEPALAAYSVNGGTNAPGRDRGRSGGRGGRGVKRKARVGVEP
VYKFRLRGRIGRGGRVMWDRVPVKGAHPLRDDGLADPEEAPLVVHSTYVQ
FPIKPPSAHILHPPMVNLN
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