prot_H-elongata_contig8636.16202.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8636.16202.1
Unique Nameprot_H-elongata_contig8636.16202.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length186
Homology
BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 3.270e-60
Identity = 100/164 (60.98%), Postives = 125/164 (76.22%), Query Frame = 0
Query:   22 LLLSLPTVDAVKNS-----QFTIYERQTEEGPRHSPLFTLPVG-CEEEECPSKMILFSNDLYGSKDGLIEEDLNELIGYNQGHCIETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTGSYMGANGETALSAGPAENFTSLQFDFNVK 179
            LLL   TV+A +       +FT++ERQ+++GPRHSPLFTLPV   E+ E PSKM+LF+NDLYGS+D LI+E  + L+GYNQGHC+ET+ + G  AEC+FT+VFD GS+TANGPFNF A+   V+PS LAVTGGTG Y GA G   +SAGPAE F SLQFDF +K
Sbjct:   14 LLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDAED-GVLPSFLAVTGGTGEYDGALGCVEVSAGPAEEFPSLQFDFKLK 176          
BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.990e-45
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 0
Query:   69 MILFSNDLYGSKDGLIEEDLNELIGYNQGHCIETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTGSYMGANGETALSAGPAENFTSLQFDFNVK 179
            M+LF+NDLYGS+D LI+ED  ELIGYNQGHC+ET+ + G  AEC+FT+VFD GS+TANGPFNF  +   V+PS LAVTGGTG Y GA G   +SAGPAE F SLQFDF +K
Sbjct:    1 MVLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFIAECFFTYVFDDGSLTANGPFNFDVED-GVLPSFLAVTGGTGEYDGAQGCVEVSAGPAEEFPSLQFDFKLK 110          
BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Match: A0A5C7NDL5_9PROT (Allene-oxide cyclase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NDL5_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 9.000e-6
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 0
Query:   73 SNDLYGSKDGLIEEDLNELIGYNQGHCIETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTGSYMGANGETALSA 163
            + DL    +G+ +    + IG + G CI T+   G   EC++T     G +T  GPF  + DS      VLAVTGGTGSY  A G+  L A
Sbjct:   52 AGDLLTFANGIYDATNEKKIGADNGWCIRTV--PGKAWECFWTISLPKGQITVEGPFYDAGDS------VLAVTGGTGSYTQARGQMTLHA 134          
BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Match: UPI00130538A6 (Allene oxide cyclase n=1 Tax=Acetobacter TaxID=434 RepID=UPI00130538A6)

HSP 1 Score: 53.1 bits (126), Expect = 1.520e-5
Identity = 33/111 (29.73%), Postives = 60/111 (54.05%), Query Frame = 0
Query:   69 MILFSNDLYGSKDGLIEEDLNELIGYNQGHCIETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTGSYMGANGETALSAGPAENFTSLQFDFNVK 179
            ++ F+ND+Y S +        + +G + G CI   V + +  EC++T +   G + A+GP     D+      ++AVTGGTG ++GA GE ++ A   +N +   +DF+ +
Sbjct:   62 VVTFTNDIYNSSN-------TKRLGQDHGFCIRLAVGKSM--ECHWTLMLPEGQIIADGPVFDHTDT------LMAVTGGTGEWVGARGEVSIHARDPKNSS---YDFHYR 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8636.16202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE3.270e-6060.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI3.990e-4566.67Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
A0A5C7NDL5_9PROT9.000e-638.46Allene-oxide cyclase n=1 Tax=Rhodospirillaceae bac... [more]
UPI00130538A61.520e-529.73Allene oxide cyclase n=1 Tax=Acetobacter TaxID=434... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034871Allene oxide cyclase superfamilyGENE3D2.40.480.10coord: 25..179
e-value: 1.8E-13
score: 52.2
IPR034871Allene oxide cyclase superfamilySUPERFAMILY141493Allene oxide cyclase-likecoord: 44..162
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..185
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePRODOMPD329160coord: 33..161
e-value: 1.0E-4
score: 106.0
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..31
score: 0.613
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8636contigH-elongata_contig8636:6853..8566 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8636.16202.1mRNA_H-elongata_contig8636.16202.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8636 5873..8590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8636.16202.1 ID=prot_H-elongata_contig8636.16202.1|Name=mRNA_H-elongata_contig8636.16202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MKMSRMVYRTAIAIIFVASTLLLLSLPTVDAVKNSQFTIYERQTEEGPRH
SPLFTLPVGCEEEECPSKMILFSNDLYGSKDGLIEEDLNELIGYNQGHCI
ETMVTEGLFAECYFTFVFDGGSMTANGPFNFSADSWSVVPSVLAVTGGTG
SYMGANGETALSAGPAENFTSLQFDFNVKTFLGKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034871Allene_oxi_cyc_sf