prot_H-elongata_contig86216.16197.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig86216.16197.1
Unique Nameprot_H-elongata_contig86216.16197.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
[Close]
BLAST of mRNA_H-elongata_contig86216.16197.1 vs. uniprot
Match: A0A6H5KX95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX95_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.780e-6
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0 
Query:    7 RNRLTLGQKREILQLLDQK-VSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKV 76
            R RLTLGQK EIL LLDQK +SR EI   + C   TV     +R  L+  AAS++    SK R+   FP+V
Sbjct:  138 RARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPEV 208
[Close]
BLAST of mRNA_H-elongata_contig86216.16197.1 vs. uniprot
Match: D7FS63_ECTSI (TGc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS63_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 8.810e-6
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0 
Query:    7 RNRLTLGQKREILQLLDQK-VSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPK 75
            R RLTLGQK EIL LLDQK +SR EI   + C   TV     +R  L+  AAS++    SK R+   FP+
Sbjct:  138 RARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPE 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86216.16197.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX95_9PHAE1.780e-647.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS63_ECTSI8.810e-647.14TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.60coord: 3..54
e-value: 6.9E-9
score: 37.1
IPR007889DNA binding HTH domain, Psq-typePFAMPF04218CENP-B_Ncoord: 5..54
e-value: 1.2E-13
score: 50.4
IPR007889DNA binding HTH domain, Psq-typePROSITEPS50960HTH_PSQcoord: 1..52
score: 15.579
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 4..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86216contigH-elongata_contig86216:2387..2617 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86216.16197.1mRNA_H-elongata_contig86216.16197.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig86216 2387..2617 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig86216.16197.1 ID=prot_H-elongata_contig86216.16197.1|Name=mRNA_H-elongata_contig86216.16197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
KRKGEKRNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRA
TLQENAASTSWSETSKSRKGGDFPKV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007889HTH_Psq
IPR009057Homeobox-like_sf