prot_H-elongata_contig86002.16181.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig86002.16181.1
Unique Nameprot_H-elongata_contig86002.16181.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
[Close]
BLAST of mRNA_H-elongata_contig86002.16181.1 vs. uniprot
Match: A0A7D9IJR2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IJR2_PARCT)

HSP 1 Score: 52.8 bits (125), Expect = 8.140e-6
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 0 
Query:   11 SQNSRNDYWIGDSGASCHMTNDASKIYNVRIPSFDKREVIT-SDGTRLRVKCIGNIDVVF---HGRSDEPITLCDVSYVPDLNFKLFSFHKALKT 101
            S N R + WI DSGA+CHM NDAS+   V++ + +K E +T +DG  ++    G +       +G+  +   L DV YVP L+  L S  KA K+
Sbjct:   47 SVNGRTNTWIIDSGATCHMCNDASQF--VKLHNLEKPEDVTLADGHVVKATGRGVVKTKIESPNGQKGKSCVLQDVLYVPSLSNNLVSVSKATKS 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86002.16181.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7D9IJR2_PARCT8.140e-637.89Retrovirus-related Pol poly from transposon TNT 1-... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86002contigH-elongata_contig86002:18..323 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86002.16181.1mRNA_H-elongata_contig86002.16181.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig86002 18..323 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig86002.16181.1 ID=prot_H-elongata_contig86002.16181.1|Name=mRNA_H-elongata_contig86002.16181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
DFSGIASAPQSQNSRNDYWIGDSGASCHMTNDASKIYNVRIPSFDKREVI
TSDGTRLRVKCIGNIDVVFHGRSDEPITLCDVSYVPDLNFKLFSFHKALK
TH
back to top