prot_H-elongata_contig85994.16179.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig85994.16179.1
Unique Name	prot_H-elongata_contig85994.16179.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	270

Homology

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 7.580e-35
Identity = 103/321 (32.09%), Postives = 149/321 (46.42%), Query Frame = 0

Query:    4 LQDYVQFATPRKILTAGGALLNDTGEGVLQGLVTNDYGDKIIVWWLDIVVVPEIGCNLFSVITAAKKSIVTIFDLKKNRVERFNVTVPLRSESGNLYSSVLDLSADGY----GTKELA----------MNAVA----NAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            L DY Q  +P+ +  AG   L  T  G+L   V ++ G ++ V  +  ++VP +G N+FS  +  K+ +  + +     +      +PL  +  +     LD++ +      GTK L            NAV     +A  WHRRLGHL+A+SLDILRK   T + +   +S  GVC + K +Q  HPK +  +++RP QL   D MG   P                                    ++H +        G RI     DKGGE TG EFR YC  + I  E+AATN PQQIGVSER G+TL+ + R +L
Sbjct:  229 LHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVR-IQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLL 548

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 2.030e-33
Identity = 84/211 (39.81%), Postives = 113/211 (53.55%), Query Frame = 0

Query:   95 ESGNLYSSVLDLSADGYGTKELAMNA--VANAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP---------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            E   LY   +DL   G    E++  A  V +A +WHRR+GH+H +SLDILRK    G+ + G++S   VCAVG ++Q  HPK  ++  +RPFQL   DLMG F+P                                 +L LF  S + P   R+    ADKGGEYT   F +YC + GI   FA+TN PQ+IG +ER+GRTL+ MVR +L
Sbjct:  239 ECDELYHFTMDLPETG----EISGVALPVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLL 445

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.470e-30
Identity = 102/328 (31.10%), Postives = 150/328 (45.73%), Query Frame = 0

Query:    4 LQDYVQFATPRKILTAGGALLNDTGEGVLQGLVTNDYGDKIIVWWLDIVVVPEIGCNLFSVITAAKKSIVTIFDLKKNRVERFNVTVPLRSESGNLYSSVLDLSADGY----GTKELA----------MNAVA----NAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEF-------AATNPPQQIGVSERVGRTLSAMVRYML 270
            L DY Q  +P+ +  AGG  L  T  G+L   V ++ G ++ V  +   +VP +G N+FS  +  KK +  + +     +      +PL  +  +     LD++ +      GTK L            NAV     +A  WHRRLGHL+A+SLDILRK   TG+ +   +S  GVC + K +Q  HPK +  +++RP QL     MG   P                                    ++H +    V   G RI     DKGGE TG     +   +G++QEF       AATN PQQ+GVSER G+TL+ ++R +L
Sbjct:  194 LHDYTQRNSPKIVGVAGGRQLKGTATGILHCTVKDNRGQQLRVR-IQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKKSDTTEAVHTYNMCVVAAGGYRIETIRCDKGGENTG-----WIRISGLLQEFSYIKLEFAATNTPQQVGVSERDGQTLAGVIRCLL 515

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.410e-29
Identity = 98/312 (31.41%), Postives = 140/312 (44.87%), Query Frame = 0

Query:   24 LNDTGEGVLQGLVTNDYGDKIIVWWLDIVVVPEIGCNLFSVITAA-----------KKSIVTIFDLKKNRVERFNVTVPLRSESGNLYSSVLDLSADGY----GTKELA----------MNAVA----NAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            L  T  G+L   V ++ G ++ V  +  ++VP +G N+FS  T             KK +  + +     +   +  +PL  +  +     LD++ +      GTK L            NAV     +A  WHRRLGHL+A+SLDILRK   TG+ +   +S  GVC + K +Q  HPK +  +++RP QL   D MG   P                                    ++H +        G RI     DKGGE TG EFR YC  + I  E+AATN PQQIG SER G+TL+ + R +L
Sbjct:  290 LKGTATGILHCTVKDNRGQQLRVR-IQGLIVPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLL 600

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5KW84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW84_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.100e-29
Identity = 95/301 (31.56%), Postives = 142/301 (47.18%), Query Frame = 0

Query:   12 TPRKILTAGGALLNDTGEGVLQGLVTNDYGDKIIVWWLDIVVVPEIGCNLFSVITAAKKSIVTIFDLKKNRVE-RFNVTVPLRSESGNLYSSVLDLSADG---------------------------------YGTKELAMNAVANAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP--------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            TP+ I  AG + L  T  G+L   + +D   ++ V       +  +G N+F+     KK +  + + K   +     V VPL+ E+ +     L ++  G                                 + T  +AM+   +A +WHRRLGH++  +++ILR    TG+ ++G VS    C + K ++   PK T+  + +P QL   D MG   P        +LH +    V   G RI     DKGGE TGEE R YC E+ I  EFAATN PQ+IGVSER G+TL+A+ R +L
Sbjct:   91 TPKIIDVAGESQLRGTTTGILHCTIKDDKEQQLPVK------LQGLGRNIFAPTALLKKGLRCVLEDKTPHLTIGGEVVVPLKQETQDQGMCTLAITFKGDPASTSKTPRNNQEPGRQPKFGKPEAVQIDHTPHATCSVAMSV--SADLWHRRLGHINPSAMEILRCNPATGVKYDGPVSPCDNCQITKHKKAPVPKKTSRVLTKPGQLVQFDNMGPIDPPAKTETTQALHAY-NMQVASEGYRIEVLPCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALL 382

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.150e-29
Identity = 71/186 (38.17%), Postives = 93/186 (50.00%), Query Frame = 0

Query:  121 VANAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            + +A  WHRRLGHL+A+SLDILRK   TG+ +   +S  GVC + K +Q  HPK +  +++RP QL   D MG   P                                    ++H +        G RI     DKGGE TG EFR YC  + I  E+AATN PQQIGVSE  G+TL+ + R +L
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLAGVTRCLL 224

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.180e-27
Identity = 72/186 (38.71%), Postives = 94/186 (50.54%), Query Frame = 0

Query:  121 VANAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            + +A  WHRRLGHL+A+SLDILRK   TG+ +   +S  GVC + K +Q  HPK +  +++RP QL   D MG   P                                    ++H +        G RI     DKGGE TG EFR YC  + I  E+AATN PQQIGVSER G+TL+ + R +L
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLL 224

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.300e-27
Identity = 72/186 (38.71%), Postives = 94/186 (50.54%), Query Frame = 0

Query:  121 VANAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            + +A  WHRRLGHL+A+SLDILRK   TG+ +   +S  GVC + K +Q  HPK +  +++RP QL   D MG   P                                    ++H +        G RI     DKGGE TG EFR YC  + I  E+AATN PQQIGVSER G+TL+ + R +L
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLL 224

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.320e-27
Identity = 72/186 (38.71%), Postives = 94/186 (50.54%), Query Frame = 0

Query:  121 VANAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            + +A  WHRRLGHL+A+SLDILRK   TG+ +   +S  GVC + K +Q  HPK +  +++RP QL   D MG   P                                    ++H +        G RI     DKGGE TG EFR YC  + I  E+AATN PQQIGVSER G+TL+ + R +L
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLL 224

[Close]

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.380e-27
Identity = 72/186 (38.71%), Postives = 94/186 (50.54%), Query Frame = 0

Query:  121 VANAQVWHRRLGHLHAQSLDILRKRYVTGITFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTP------------------------------------SLHLFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQQIGVSERVGRTLSAMVRYML 270
            + +A  WHRRLGHL+A+SLDILRK   TG+ F   +S  GVC + K +Q  HPK +  +++RP QL   D +G   P                                    ++H +        G RI     DKGGE TG EFR YC  + I  E+AATN PQQIGVSER G+TL+ + R +L
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLL 224

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot

BLAST of mRNA_H-elongata_contig85994.16179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVF6_9PHAE	7.580e-35	32.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1J1_9PHAE	2.030e-33	39.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMG5_9PHAE	2.470e-30	31.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT84_9PHAE	1.410e-29	31.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KW84_9PHAE	5.100e-29	31.56	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KZ34_9PHAE	5.150e-29	38.17	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5K500_9PHAE	1.180e-27	38.71	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	1.300e-27	38.71	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	1.320e-27	38.71	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRJ1_9PHAE	2.380e-27	38.71	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 199..270 e-value: 1.4E-7 score: 33.1
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 43..198 coord: 217..270
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 43..198 coord: 217..270
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 219..270 score: 10.559
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 178..270

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig85994	contig	H-elongata_contig85994:1803..2711 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig85994.16179.1	mRNA_H-elongata_contig85994.16179.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig85994 1803..2711 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig85994.16179.1 ID=prot_H-elongata_contig85994.16179.1|Name=mRNA_H-elongata_contig85994.16179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
KHRLQDYVQFATPRKILTAGGALLNDTGEGVLQGLVTNDYGDKIIVWWLD
IVVVPEIGCNLFSVITAAKKSIVTIFDLKKNRVERFNVTVPLRSESGNLY
SSVLDLSADGYGTKELAMNAVANAQVWHRRLGHLHAQSLDILRKRYVTGI
TFEGDVSDGGVCAVGKAQQFVHPKTTNHKVNRPFQLCYGDLMGSFTPSLH
LFVGSTVIPFGGRIVRWCADKGGEYTGEEFRQYCLETGIIQEFAATNPPQ
QIGVSERVGRTLSAMVRYML

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf