prot_H-elongata_contig85910.16174.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig85910.16174.1
Unique Nameprot_H-elongata_contig85910.16174.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length196
Homology
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: D8LFM8_ECTSI (Pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM8_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 4.230e-92
Identity = 148/196 (75.51%), Postives = 164/196 (83.67%), Query Frame = 0
Query:    1 DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            +E AF++E++TVEEGE G+RLD+FLG R+PEQSRSYFG LCQLGMV V GKTAKKS KVE GQEVEVRF+ISPELS++GEDIPLDIL+EDD+IIAV+KP GMVVHPAPGSWNGTFVNALV HL K  AD      G   A     VPDGEHNP LRPGIVHRLDKGTTGVLLAAKNP MQAKLA LFA+RR+S  Y
Sbjct:   97 EEIAFNTEMLTVEEGEGGKRLDSFLGARMPEQSRSYFGGLCQLGMVLVGGKTAKKSVKVEEGQEVEVRFIISPELSLQGEDIPLDILYEDDEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKSGADG--NGLGVAEAAF-QSVPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAQRRISKSY 289          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7S3XXK7_HETAK (Pseudouridine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK)

HSP 1 Score: 193 bits (491), Expect = 7.070e-57
Identity = 105/196 (53.57%), Postives = 127/196 (64.80%), Query Frame = 0
Query:    1 DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            D+     E + V E    +RLDAFL    PEQSRSYFGSLCQ G+V V G+  KKS K+  GQEV V F+ + E++ E EDIPLDIL+ED+ +IAV KPPGMVVHPAPGSW+GTF NAL  H+  +  D         RA  G D         LRPGIVHRLDKGT+GVLLA+KN    AKL+ +FA R++   Y
Sbjct:   60 DDDDLQEETVIVGEEYNKKRLDAFLSDEFPEQSRSYFGSLCQQGLVRVGGRAVKKSEKLRAGQEVSVAFLPTAEMAAEPEDIPLDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGEDY--------RAAGGGDA--------LRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRKIKKTY 239          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A836CH15_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH15_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.280e-54
Identity = 101/193 (52.33%), Postives = 130/193 (67.36%), Query Frame = 0
Query:    5 FSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTA-KKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            F   V   +  + G+R+DAFL  ++P+QSR+YFG LC  G V V G +A KKS KV  GQ + VRF+ + EL++  EDIPLD++FED +++A+ KPPGMVVHPAPG+WNGTFVNAL+HHL K                +G  V  GE    LRPG+VHRLDKGT+GVLLAAK P MQ +L+ LF +R+V   Y
Sbjct:   51 FDVSVFEADLADAGQRIDAFLCSKVPDQSRTYFGDLCTKGCVCVNGSSAVKKSHKVTAGQIISVRFLATAELNLGPEDIPLDVIFEDSELLAIAKPPGMVVHPAPGNWNGTFVNALLHHLSK----------------DGSVVSLGESGD-LRPGVVHRLDKGTSGVLLAAKTPIMQKQLSQLFHDRKVRKTY 226          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7S2WTM0_9STRA (Pseudouridine synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTM0_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.920e-51
Identity = 101/198 (51.01%), Postives = 126/198 (63.64%), Query Frame = 0
Query:    1 DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVF--VEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            D    ++EV  VEEG  G+RLD FL  ++P+QSRSY GSLC  G V+   +G+  KKS +V   +EV VRF ++ EL++  E + LDILFED+ ++ VNK PGMVVHPAPG WNGT VNAL+HHLG  A  R+    G D  T             LRPGIVHRLDKGT+G ++ AK P  QA LA  F ER+V   Y
Sbjct:   28 DAVGAATEVFMVEEGGAGKRLDQFLASQVPDQSRSYLGSLCTGGCVWRPTDGRVLKKSHRVRAAEEVAVRFQVNDELALAPEALDLDILFEDESMLVVNKKPGMVVHPAPGHWNGTLVNALLHHLGP-AGGRL----GQDSGT-------------LRPGIVHRLDKGTSGAIVVAKTPEAQAALADAFRERKVLKTY 207          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7X5TFN1_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5TFN1_9BACT)

HSP 1 Score: 160 bits (406), Expect = 3.040e-45
Identity = 89/191 (46.60%), Postives = 116/191 (60.73%), Query Frame = 0
Query:    7 SEVITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            +E I + E E G+RLD  L  R  E +SR+YF SL +   V + G   KK  K + G EVE+ FV++PE+ V  E IPLD+L+ED+DI+ VNKP GMVVHPAPG+W+GTFVNAL++H  +  +D  H                      LRPGIVHRLDK T+GVL++AK    Q +L  +FA R V   Y
Sbjct:    6 TETIIITEDEAGQRLDKILANRFKEVRSRTYFQSLIRDHNVLLNGSPIKKQVKPQVGDEVEILFVLTPEIDVTPEPIPLDVLYEDEDILVVNKPSGMVVHPAPGNWSGTFVNALLYHCKQLPSDSQH----------------------LRPGIVHRLDKETSGVLVSAKTSQAQQRLVEMFASREVYKEY 174          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A6M1ZYV1_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A6M1ZYV1_9BACT)

HSP 1 Score: 158 bits (400), Expect = 1.860e-44
Identity = 92/191 (48.17%), Postives = 112/191 (58.64%), Query Frame = 0
Query:    7 SEVITVEEGEEGRRLDAFLGGRIPEQ-SRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            ++VI V   E G RLD  L  R   + SR+YF  L +  +V + G   KK  K   G E+EV FV++P+  V+ E IPLDIL+EDDDI+ VNKP GMVVHPAPG+W GTFVNAL+HH    AAD                         +RPGIVHRLDK T+GVL+AAKN   Q KL   FA R+V   Y
Sbjct:    5 TDVIIVTASEAGERLDKILAARYENRHSRTYFQYLIEEHLVSLNGAPVKKRIKPIEGDEIEVHFVLTPQTEVQPEPIPLDILYEDDDILVVNKPAGMVVHPAPGNWTGTFVNALLHHCQDLAADPND----------------------VRPGIVHRLDKETSGVLIAAKNLLAQQKLIEQFANRKVKKQY 173          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7V9UFC7_9BACT (Pseudouridine synthase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7V9UFC7_9BACT)

HSP 1 Score: 159 bits (401), Expect = 2.130e-44
Identity = 90/189 (47.62%), Postives = 117/189 (61.90%), Query Frame = 0
Query:   10 ITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGK-KAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            I + E E G+RLD  L  R  E +SR+YF  L +   V V G+  KK  K E G EVEV F+++PE++++ E+IPLDI++EDD II +NKP GMVVHPA G+W GTFVNAL++H  + +   R   +TG                  LRPGIVHRLDK TTG+LLAAK    Q KL  LF+ R++   Y
Sbjct:    8 IIISETEAGQRLDKILADRFKELKSRTYFQYLIEEQKVLVNGEQVKKRFKPEFGDEVEVHFILTPEITLQAENIPLDIIYEDDSIILINKPAGMVVHPAAGNWTGTFVNALLYHCQEIEKLSRSANSTG-----------------NLRPGIVHRLDKETTGLLLAAKTEEAQRKLVELFSNRKIIKEY 179          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A1F8J0B0_9BACT (Pseudouridine synthase n=1 Tax=Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39 TaxID=1797598 RepID=A0A1F8J0B0_9BACT)

HSP 1 Score: 157 bits (398), Expect = 5.140e-44
Identity = 89/189 (47.09%), Postives = 109/189 (57.67%), Query Frame = 0
Query:    8 EVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            E + +   EEG R+D  L  R P  SR+YF  L +LG V + G+  KK    E G E+EV F  +PE S+E E IPLDIL+ED+ I+A+NKP GMVVHPAPG W+ TFVNAL+ H         H   G D                LRPGIVHRLDK TTGVLLAAK      +L  LF+ R++   Y
Sbjct:    8 EFLLISSREEGLRIDKLLANRFPGHSRTYFQHLLELGCVLINGERVKKKTIPEEGDEIEVCFQATPEASLEPEHIPLDILYEDEHILAINKPAGMVVHPAPGHWSKTFVNALLAHC-------QHLAPGVDP---------------LRPGIVHRLDKDTTGVLLAAKTTIAHQRLIELFSTRQMKKLY 174          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A7W1U2J2_9BACT (Pseudouridine synthase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1U2J2_9BACT)

HSP 1 Score: 157 bits (396), Expect = 8.590e-44
Identity = 88/190 (46.32%), Postives = 120/190 (63.16%), Query Frame = 0
Query:    8 EVITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            E++ V++ E G RLD  L  R    +SR+YF  L + G V + G +AKK  K   G E++V FV++PE+ +  E IPLDI+FED+ IIA+NKP GMVVHPA G+W GTFVNAL++H  +                 G+ +P  E +P LRPGIVHRLDK T+G+LLAAK P    +L  +F+ER++   Y
Sbjct:    5 ELLVVQDEEAGERLDKILARRFDGIKSRTYFQMLIEEGHVLLNGLSAKKRIKPTAGDEIQVNFVLTPEIGLSPEAIPLDIIFEDEHIIAINKPVGMVVHPAVGNWTGTFVNALLYHCQQL----------------GLSLP--ESSP-LRPGIVHRLDKDTSGLLLAAKTPLAHQRLVAMFSERKIHKEY 175          
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Match: A0A0H5E3K8_9BACT (Pseudouridine synthase n=1 Tax=Estrella lausannensis TaxID=483423 RepID=A0A0H5E3K8_9BACT)

HSP 1 Score: 154 bits (390), Expect = 1.030e-42
Identity = 89/190 (46.84%), Postives = 119/190 (62.63%), Query Frame = 0
Query:    8 EVITVEEGEEGRRLDAFLGGRIPE-QSRSYFGSLCQLGMVFVEGKTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPPGMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGEHNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY 196
            E + + E E G RLD  L GR  + +SR+YF  L Q G V V G   KK  +   G  VEV+F+++PEL++  E+IPL IL+ED+ +IA++KPPGMVVHPAPG+W+GT VNAL+ H  +   +       F +          EH   +RPGIVHRLDK T+GVLLAAK+ +M  KL  LF+ R+V   Y
Sbjct:   11 EEVLIAESEAGERLDKILAGRFKDVKSRTYFQYLFQEGKVSVNGLPVKKQYRPRTGDLVEVQFILTPELNLAAENIPLRILYEDESLIAIDKPPGMVVHPAPGNWSGTVVNALLFHCTRLKEE-------FQQ----------EH---IRPGIVHRLDKETSGVLLAAKSHSMHGKLVDLFSSRQVYKEY 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85910.16174.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFM8_ECTSI4.230e-9275.51Pseudouridine synthase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S3XXK7_HETAK7.070e-5753.57Pseudouridine synthase n=1 Tax=Heterosigma akashiw... [more]
A0A836CH15_9STRA1.280e-5452.33Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2WTM0_9STRA2.920e-5151.01Pseudouridine synthase n=1 Tax=Rhizochromulina mar... [more]
A0A7X5TFN1_9BACT3.040e-4546.60Pseudouridine synthase n=1 Tax=Chlamydiae bacteriu... [more]
A0A6M1ZYV1_9BACT1.860e-4448.17Pseudouridine synthase n=1 Tax=Chlamydiae bacteriu... [more]
A0A7V9UFC7_9BACT2.130e-4447.62Pseudouridine synthase n=1 Tax=Parachlamydiaceae b... [more]
A0A1F8J0B0_9BACT5.140e-4447.09Pseudouridine synthase n=1 Tax=Chlamydiae bacteriu... [more]
A0A7W1U2J2_9BACT8.590e-4446.32Pseudouridine synthase n=1 Tax=Parachlamydiaceae b... [more]
A0A0H5E3K8_9BACT1.030e-4246.84Pseudouridine synthase n=1 Tax=Estrella lausannens... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 84..196
e-value: 2.0E-24
score: 88.3
NoneNo IPR availablePANTHERPTHR21600:SF34RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTICcoord: 7..193
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 7..193
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 19..104
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 92..193
e-value: 2.1E-12
score: 47.4
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 7..74
e-value: 2.9E-13
score: 51.1
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 160..174
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 19..91
score: 10.213
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 80..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85910contigH-elongata_contig85910:1429..2437 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85910.16174.1mRNA_H-elongata_contig85910.16174.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig85910 1429..2437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig85910.16174.1 ID=prot_H-elongata_contig85910.16174.1|Name=mRNA_H-elongata_contig85910.16174.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
DETAFSSEVITVEEGEEGRRLDAFLGGRIPEQSRSYFGSLCQLGMVFVEG
KTAKKSAKVERGQEVEVRFVISPELSVEGEDIPLDILFEDDDIIAVNKPP
GMVVHPAPGSWNGTFVNALVHHLGKKAADRMHRTTGFDRATNGMDVPDGE
HNPGLRPGIVHRLDKGTTGVLLAAKNPAMQAKLAGLFAERRVSLPY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR036986S4_RNA-bd_sf
IPR006224PsdUridine_synth_RluC/D_CS
IPR002942S4_RNA-bd
IPR020103PsdUridine_synth_cat_dom_sf