prot_H-elongata_contig85852.16168.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig85852.16168.1
Unique Nameprot_H-elongata_contig85852.16168.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length105
Homology
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.330e-15
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A V +S +R+ +E + + E +G L  G F   D    P GR+ V S+W  ++K+++ G  VK K+R+VA+GF+Q PNVDY  ++SP   SA +K++
Sbjct:  527 PPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVD--GTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLM 625          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.340e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  290 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 388          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.380e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  736 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 834          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.380e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G   K K+R+VA+GF+Q+PNVDY  ++SP   SA + ++
Sbjct:  845 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLM 943          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct: 1115 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 1213          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct: 1135 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 1233          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.390e-15
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A VA+S +R+ +E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct: 1278 PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 1376          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.540e-15
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A VA+S +R+  E + + E  G L  G F   D    P GR+ V S+W  S+K+++ G     K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  536 PPMTVAGVAKSVYRERLEQAMREEFEGHLGTGTFSFVD--GAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 634          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.860e-15
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 0
Query:    2 PATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVK-IIAVA 104
            P T  +V  S ++  +E + K E++G    G F  T  K +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H  +S    +A +K +IAVA
Sbjct:  122 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTF--TKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVA 223          
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Match: A0A6H5JSU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.680e-15
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    1 PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVGSRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKII 101
            PP T A V +S +R+ +E + + E +G L  G F   D    P GR+ V S+W  ++K+++ G   K K+R+VA+GF+Q+PNVDY  ++SP   SA +K++
Sbjct:  306 PPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSFVD--GTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLM 404          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85852.16168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVQ8_9PHAE1.330e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.340e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.380e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE1.380e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.390e-1540.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.390e-1540.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.390e-1540.59Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JTV6_9PHAE2.540e-1540.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE3.860e-1541.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSU1_9PHAE4.680e-1539.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 41..101
e-value: 5.6E-14
score: 52.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85852contigH-elongata_contig85852:867..1181 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85852.16168.1mRNA_H-elongata_contig85852.16168.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig85852 867..1181 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig85852.16168.1 ID=prot_H-elongata_contig85852.16168.1|Name=mRNA_H-elongata_contig85852.16168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
PPATQAEVARSSFRKAFEYSQKVELNGLLDVGCFEVTDTKAVPRGRKIVG
SRWVHSYKSDELGNCVKTKSRMVAKGFTQMPNVDYHETTSPTSVSAPVKI
IAVAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2