prot_H-elongata_contig85833.16163.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig85833.16163.1
Unique Nameprot_H-elongata_contig85833.16163.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length181
Homology
[Close]
BLAST of mRNA_H-elongata_contig85833.16163.1 vs. uniprot
Match: D7FJJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ8_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 5.920e-61
Identity = 116/187 (62.03%), Postives = 133/187 (71.12%), Query Frame = 0 
Query:    1 MDLPGPVRILDDDVRYVAKQRELAADMAKSAYYITPRNAVKDVERYSDGFTLNDQQRRPLASQLSAEAKRYLPPELTDREAEPSPSMAPGALRGLKPLPAFDPKSLTALEDRERKSAETGAAERDXXXXXXXXXXXXXXXXXXXXXAGMMSDVEDD-------DDYAVDHYESGDDSVGDDEPAAVF 180
            MDLPGP+RIL+DDV +VAKQRELAADM+KS YYITP+ AVKDVERYSDG      + + LASQLSA  KR+LPPELTDR A  + + A G L GLKPLPAFD KSLTALED+ERKSAETG AE++                     AGM+SDVE +        DYAVDHYESG++S GDDEPAAVF
Sbjct:   15 MDLPGPIRILEDDVSHVAKQRELAADMSKSIYYITPKYAVKDVERYSDGVHSGGYRGQSLASQLSAGMKRHLPPELTDRPAIGT-TAAGGKLPGLKPLPAFDGKSLTALEDKERKSAETGGAEKEKDKED----------------AGMLSDVEAEVEEXXXXXDYAVDHYESGNESGGDDEPAAVF 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85833.16163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJJ8_ECTSI5.920e-6162.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024661DNA-directed RNA polymerase III, subunit Rpc31PANTHERPTHR15367DNA-DIRECTED RNA POLYMERASE IIIcoord: 12..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85833contigH-elongata_contig85833:1657..2199 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85833.16163.1mRNA_H-elongata_contig85833.16163.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig85833 1657..2229 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig85833.16163.1 ID=prot_H-elongata_contig85833.16163.1|Name=mRNA_H-elongata_contig85833.16163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MDLPGPVRILDDDVRYVAKQRELAADMAKSAYYITPRNAVKDVERYSDGF
TLNDQQRRPLASQLSAEAKRYLPPELTDREAEPSPSMAPGALRGLKPLPA
FDPKSLTALEDRERKSAETGAAERDKDKEKDKDKDDGDADADADGDAGMM
SDVEDDDDYAVDHYESGDDSVGDDEPAAVF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024661RNA_pol_III_Rpc31