prot_H-elongata_contig8573.16158.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8573.16158.1
Unique Nameprot_H-elongata_contig8573.16158.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length152
Homology
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 120 bits (300), Expect = 1.410e-28
Identity = 60/140 (42.86%), Postives = 87/140 (62.14%), Query Frame = 0
Query:    9 VYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGF 148
            +Y +V RP+++ VV  K ++K   G DG++EKYK RLVA+GF + EG+ + E ++      SI   LA TA  D E+   D   AFL  D+DEE+Y+ IP  +++   ++ RLNKA+YGL QAG  W  K C +  A+GF
Sbjct:  909 LYDEVERPRNRKVVDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFTSIRTLLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAGHKWYKKICAEFEALGF 1048          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 117 bits (294), Expect = 9.140e-28
Identity = 56/140 (40.00%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    9 VYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGF 148
            V+++V RP+D+ ++G+K ++K   G DG+VEKYK RLVAQGF + EG+ Y E ++    + SI + LA  A  D E+   D   AFL  +++EE+Y+++P  ++     V RL KA+YGL QA + W  K   ++  +GF
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGF 1165          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 114 bits (284), Expect = 1.980e-26
Identity = 56/140 (40.00%), Postives = 87/140 (62.14%), Query Frame = 0
Query:    9 VYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGF 148
            +Y +V RP+++ V+  K ++K   G DG++EKYK RLVA+GF + EG+ + E ++     AS+   LA  A  D E+   D   AFL  D+DEE+Y+++P  ++    +V +LNKA+YGL QAG+ W  K   +  A+GF
Sbjct:  898 LYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGF 1037          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 114 bits (284), Expect = 2.040e-26
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = 0
Query:    9 VYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGF 148
            +Y +V RP+++ V+  K ++K   G DG++EKYK RLVA+GF + EG+ + E ++     AS+   LA  A  D E+   D   AFL  D+DEE+Y+++P  +     +V +LNKA+YGL QAG+ W  K   +  A+GF
Sbjct:  957 LYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGF 1096          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 113 bits (283), Expect = 2.700e-26
Identity = 55/140 (39.29%), Postives = 87/140 (62.14%), Query Frame = 0
Query:    9 VYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGF 148
            +Y +V RP+++ V+  K ++K   G DG++EKYK RLVA+GF + EG+ + E ++     AS+   LA  A  D E+   D   AFL  D+DEE+Y+++P  ++    ++ +LNKA+YGL QAG+ W  K   +  A+GF
Sbjct:  634 LYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGF 773          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 112 bits (281), Expect = 4.970e-26
Identity = 58/150 (38.67%), Postives = 96/150 (64.00%), Query Frame = 0
Query:    3 SMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPEEY--QEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQ 150
            S+++N  ++ V+ PK K VVG+K ++K    ++G V++YK RLVAQG+ + EG+ Y+E++S      +I   LA + AK+ E+   D   AFL+ +++EE+Y+  P+ Y  +E P  V +L K+IYGL Q+ +CWNN     + + G+KQ
Sbjct:  835 SLIENETWELVSLPKGKNVVGSKWVFKVKTDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNLEEEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQ 984          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO)

HSP 1 Score: 112 bits (281), Expect = 5.090e-26
Identity = 56/147 (38.10%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    7 NCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPE--EYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA 151
            N VY+ V  P  +  +GTK + K+    DG ++KYK RLV QGF +  G+ Y + ++     +++ +  A +AAK+ E+ H D   AFL  D++E++Y++ P   ++   PG+V +LNK++YGL QA  CWN K  D + A+G+K A
Sbjct:  608 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAA 754          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO)

HSP 1 Score: 112 bits (281), Expect = 5.090e-26
Identity = 56/147 (38.10%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    7 NCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPE--EYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA 151
            N VY+ V  P  +  +GTK + K+    DG ++KYK RLV QGF +  G+ Y + ++     +++ +  A +AAK+ E+ H D   AFL  D++E++Y++ P   ++   PG+V +LNK++YGL QA  CWN K  D + A+G+K A
Sbjct:  921 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAA 1067          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO)

HSP 1 Score: 112 bits (281), Expect = 5.260e-26
Identity = 56/147 (38.10%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    7 NCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPE--EYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA 151
            N VY+ V  P  +  +GTK + K+    DG ++KYK RLV QGF +  G+ Y + ++     +++ +  A +AAK+ E+ H D   AFL  D++E++Y++ P   ++   PG+V +LNK++YGL QA  CWN K  D + A+G+K A
Sbjct: 1901 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAA 2047          
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Match: A0A5E8C8U5_9ASCO (Uncharacterized protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8U5_9ASCO)

HSP 1 Score: 112 bits (281), Expect = 5.290e-26
Identity = 56/147 (38.10%), Postives = 90/147 (61.22%), Query Frame = 0
Query:    7 NCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGFCRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDIDEELYIEIPE--EYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQA 151
            N VY+ V  P  +  +GTK + K+    DG ++KYK RLV QGF +  G+ Y + ++     +++ +  A +AAK+ E+ H D   AFL  D++E++Y++ P   ++   PG+V +LNK++YGL QA  CWN K  D + A+G+K A
Sbjct: 2393 NHVYQVVPLPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFALSAAKNCEMHHVDVKNAFLNGDLEEDIYVKPPTGIDHNTPPGMVWKLNKSLYGLKQAPLCWNKKLVDKLEALGYKAA 2539          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8573.16158.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GM49_9APHY1.410e-2842.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK9.140e-2840.00Integrase catalytic domain-containing protein (Fra... [more]
A0A401H317_9APHY1.980e-2640.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G4V0_9APHY2.040e-2640.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY2.700e-2639.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9D6Q5_PARCT4.970e-2638.67Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5E8C1Z7_9ASCO5.090e-2638.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8BZM0_9ASCO5.090e-2638.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1N6_9ASCO5.260e-2638.10Integrase catalytic domain-containing protein n=3 ... [more]
A0A5E8C8U5_9ASCO5.290e-2638.10Uncharacterized protein n=2 Tax=Saprochaete ingens... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..150
e-value: 7.3E-28
score: 97.8
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..148
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 2..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8573contigH-elongata_contig8573:7131..7586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8573.16158.1mRNA_H-elongata_contig8573.16158.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8573 7128..8267 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8573.16158.1 ID=prot_H-elongata_contig8573.16158.1|Name=mRNA_H-elongata_contig8573.16158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MRSMVDNCVYKQVARPKDKLVVGTKMLYKRNAGQDGKVEKYKCRLVAQGF
CRFEGMHYTEMYSSTPATASIWMALATTAAKDGELRHFDADQAFLKMDID
EELYIEIPEEYQEFPGVVRRLNKAIYGLIQAGKCWNNKFCDDMTAIGFKQ
A*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like