prot_H-elongata_contig8570.16153.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8570.16153.1
Unique Nameprot_H-elongata_contig8570.16153.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length469
Homology
BLAST of mRNA_H-elongata_contig8570.16153.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 5.690e-61
Identity = 187/488 (38.32%), Postives = 241/488 (49.39%), Query Frame = 0
Query:    1 MCRLKSPPSTARRLVLALVIALGLRWRRWDDIRSRFLRSMVDLVEFLQSFDKDRPGLISASLRPFVDDPHLSPAEVRQVSASMVWLSRWLRALHDYLAVKEG---NTDAVPLSRTLLASASRAGDGRAATTRRRSRSHAPTLSLGKLPTSTAVTIPEDATARTADVGMARTCMSGPSKAAIGGTPA---------DHDYNEGLDGSSPEAVAEAVRERRGGDSTQRYVPEATSTRGATRETSSSRARTFSIISEEGAVIPGVEGNEMKAAEHEDDGDGGDLGSESVWTTGALTSQGSIMGDSTDDQVGATVGVSVSVSSPVAVLAREERFGYGDVHEGSENGGKGRGVSTGSSWKDKDRGAGRPSTAGQERRVFTLQDGVSVAGR-----------RYNREGAATRGTDAGFRSSDAPRALHACVYHHQPKGLTASHFANPKARRLPRERRNPILAHTRWPTPVEVRERERTEQRSAFSVDSSLVAFE 465
            MCRLKSPP   RRL+L LVIALGLRWRRW DIR+  L +  +L  FL+ F+KDR GL S +L PFV+DP LSPAEVR+V+A MVW+ RWL ALHDYLAVKEG   + D +P+ +    S SRA   + A  R+ S   A     G +P   A    E       + G         + AA G T A         D  ++ G  G+            RG DST    P +T T G T     SR   F    E G    G +G ++           GDL SES WT G +TS+G ++   T+DQV   +G SV V             G G+V +      K  G              G P++    RRV +  D    AG            +  R G+  RG   G       +A HAC+Y H+ KG T S  ANPKARR  +   +PILA+TRWP PV+V  +ERTEQRSA+S++ S +A++
Sbjct:  561 MCRLKSPPLACRRLMLGLVIALGLRWRRWSDIRTHLLGNKPELQGFLKRFNKDRAGLASTALLPFVEDPSLSPAEVRRVAACMVWVPRWLHALHDYLAVKEGKELDVDTMPMFQEPATSRSRA---KLARRRQSSGCRAHGTVPGTVPPDGASKGREGRRPGAGEGGSGTQPRKSGTAAAAGATAATMGLSEQKHDQGHHHGRGGTRKTRRPSRAAATRGDDST--CPPGSTPTGGDTE--GGSRGEGFRYFGEGGR---GGDGGKVDVD--------GDLESESQWTVGTVTSRGDVLRTPTEDQV--DIGSSVVVGG-----------GKGNVRKAPH---KHAGXXXXXXXXXXXXXXGVPASP-PRRRVRSTGDAARRAGTGTLGFEETLAPKGGRRGSVRRGLSRGD-----TQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANTRWPPPVDVPAQERTEQRSAYSLEHSFLAYD 1008          
BLAST of mRNA_H-elongata_contig8570.16153.1 vs. uniprot
Match: A0A6H5JPQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.330e-14
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 0
Query:  399 HACVYHHQPKGLTASHFANPKARRLPRERRNPILAHTRWPTPVEVRERERTEQRSAFSVDSSLVAFE 465
            HAC+Y H+ KG T S  ANPKARR  +   +PILA+ RWP PV+V  +ERTEQRSA+S++ S +A++
Sbjct:   25 HACIYRHKLKGRTPSRVANPKARRPVQAAHDPILANIRWPPPVDVPAQERTEQRSAYSLEHSSLAYD 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8570.16153.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMZ6_ECTSI5.690e-6138.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPQ9_9PHAE3.330e-1455.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.920.20coord: 1..120
e-value: 1.4E-7
score: 32.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..468
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8570contigH-elongata_contig8570:162..7024 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8570.16153.1mRNA_H-elongata_contig8570.16153.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8570 81..8180 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8570.16153.1 ID=prot_H-elongata_contig8570.16153.1|Name=mRNA_H-elongata_contig8570.16153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=469bp
MCRLKSPPSTARRLVLALVIALGLRWRRWDDIRSRFLRSMVDLVEFLQSF
DKDRPGLISASLRPFVDDPHLSPAEVRQVSASMVWLSRWLRALHDYLAVK
EGNTDAVPLSRTLLASASRAGDGRAATTRRRSRSHAPTLSLGKLPTSTAV
TIPEDATARTADVGMARTCMSGPSKAAIGGTPADHDYNEGLDGSSPEAVA
EAVRERRGGDSTQRYVPEATSTRGATRETSSSRARTFSIISEEGAVIPGV
EGNEMKAAEHEDDGDGGDLGSESVWTTGALTSQGSIMGDSTDDQVGATVG
VSVSVSSPVAVLAREERFGYGDVHEGSENGGKGRGVSTGSSWKDKDRGAG
RPSTAGQERRVFTLQDGVSVAGRRYNREGAATRGTDAGFRSSDAPRALHA
CVYHHQPKGLTASHFANPKARRLPRERRNPILAHTRWPTPVEVRERERTE
QRSAFSVDSSLVAFEAGR*
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