prot_H-elongata_contig8509.16102.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8509.16102.1
Unique Nameprot_H-elongata_contig8509.16102.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length397
Homology
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BLAST of mRNA_H-elongata_contig8509.16102.1 vs. uniprot
Match: A0A6H5JMY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMY3_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 6.400e-44
Identity = 128/219 (58.45%), Postives = 155/219 (70.78%), Query Frame = 0 
Query:    1 MSNPGKALLILLLALRVSPDVLGFSVSVRPGQRARGP--RAVGRKRMSAMEASVTIRMGAGDSVYDGLINRVETASKAPKVTVPAFRSQEPDAPATIAEVKQXXXXXXXXXXXSMIITEQRSVASGESGLAYDKAVTAGSMGLQVVEGLAVLAAVPAIIVAVKKQKARQERQLKSQARAEELAGSRKAREEAKKTAAEQAIVTRKEKQDAIAERIEAAR 217
            M   G+ LL+ LLAL VSPDVLGFS+S    +R+R    RA   KR+SA     T+ M A D  +D L++RVETA+KAP  +VP F+SQE DAPATIAEVK+    XXXXXXX        SV +  SG AYD AV+ GS+GLQVVEGLAVLAAVPAI+ A+ KQKA QER+ K+QARA+ELA  R+AR +AK  A  QA + RKEKQ+ IA+RIEAAR
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRLSAAR---TLNMAA-DPRFDSLVDRVETAAKAPVESVPVFKSQEADAPATIAEVKEQVAPXXXXXXXXX---RPPSVLAAGSGQAYDSAVSVGSVGLQVVEGLAVLAAVPAILTALNKQKATQERKEKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAAR 212
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BLAST of mRNA_H-elongata_contig8509.16102.1 vs. uniprot
Match: D8LKJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ5_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.630e-41
Identity = 125/219 (57.08%), Postives = 152/219 (69.41%), Query Frame = 0 
Query:    1 MSNPGKALLILLLALRVSPDVLGFSVSVRPGQRARGP--RAVGRKRMSAMEASVTIRMGAGDSVYDGLINRVETASKAPKVTVPAFRSQEPDAPATIAEVKQXXXXXXXXXXXSMIITEQRSVASGESGLAYDKAVTAGSMGLQVVEGLAVLAAVPAIIVAVKKQKARQERQLKSQARAEELAGSRKAREEAKKTAAEQAIVTRKEKQDAIAERIEAAR 217
            M   G+ LL+ LLAL VSPDVLGFS+S    +R+R    RA   KR SA     T+ M A D  +DGL++RVETA+KAP+ ++P F+SQE DAPATIAEVK+  XXXXXXXXX                 AYD AV+ GS+GLQV EGLAVLAAVPAI+ A+ KQKA QER+ K+QARA+ELA  R+AR +AK  A  QA + RKEKQ+ IA+RIEAAR
Sbjct:    1 MGKSGRTLLVALLALLVSPDVLGFSLSPAGARRSRQQHQRAPRGKRSSAAR---TLNMAA-DPRFDGLVDRVETAAKAPRESIPVFKSQEADAPATIAEVKEQVXXXXXXXXXXXXXXXXXXXXXXX---AYDSAVSVGSVGLQVAEGLAVLAAVPAILTALNKQKATQERKDKNQARADELAKGRQARADAKAAALAQAAIDRKEKQEGIAQRIEAAR 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8509.16102.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMY3_9PHAE6.400e-4458.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKJ5_ECTSI1.630e-4157.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 228..392
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..397
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.848

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8509contigH-elongata_contig8509:1147..9921 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8509.16102.1mRNA_H-elongata_contig8509.16102.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8509 1041..9921 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8509.16102.1 ID=prot_H-elongata_contig8509.16102.1|Name=mRNA_H-elongata_contig8509.16102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=397bp
MSNPGKALLILLLALRVSPDVLGFSVSVRPGQRARGPRAVGRKRMSAMEA
SVTIRMGAGDSVYDGLINRVETASKAPKVTVPAFRSQEPDAPATIAEVKQ
QQQQQQTTSSQSMIITEQRSVASGESGLAYDKAVTAGSMGLQVVEGLAVL
AAVPAIIVAVKKQKARQERQLKSQARAEELAGSRKAREEAKKTAAEQAIV
TRKEKQDAIAERIEAARLEEERQESVRLMVLEAQVKKQEKDAIAAKEAAE
QEAREKAESEARRGKSRKERAERRAAKAKQQAEALSEAKAKAEAEAEARA
VREAEKIAAEAKAEAEANRKAEEMAAAEAKAAKEAAEAKAKVEAEAKAKR
EAEEKAAAEAKAAKEADEAKAKEEAEAKAKREAEEVAAAEAKAAKEA
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