prot_H-elongata_contig84971.16095.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig84971.16095.1
Unique Nameprot_H-elongata_contig84971.16095.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length188
Homology
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: D8LTB2_ECTSI (50S ribosomal protein L10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB2_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 8.550e-64
Identity = 112/177 (63.28%), Postives = 141/177 (79.66%), Query Frame = 0
Query:   10 RAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQVCEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWA-EPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKLGRSXXXXXXXXXXXXXXAFAEE 185
            R  K KV+EEV  LL  SS++FS+P+SYI+ N+VV LR D+PEGCT +VVKNKLMRIA+  ++F Q+ ++TTG NFW+F+EGE+NLA PIKY+  F K  D K   GW   PF++GVF  +V+DGPGV+AISKLPTK+EL QR+A+A+N +PTKLGRSXXXXXXXXXXXX  AFA E
Sbjct:   57 RPAKLKVIEEVKSLLESSSMVFSVPSSYISANQVVALRKDLPEGCTAKVVKNKLMRIASDGSEFAQLADVTTGENFWIFIEGEDNLAEPIKYVAEFAKQFD-KDTPGWGGSPFKSGVFGGDVLDGPGVVAISKLPTKKELMQRLAIAVNSVPTKLGRSXXXXXXXXXXXXKLAFAPE 232          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A1Z5K7S4_FISSO (Large subunit ribosomal protein L10 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7S4_FISSO)

HSP 1 Score: 124 bits (310), Expect = 4.900e-32
Identity = 72/160 (45.00%), Postives = 93/160 (58.13%), Query Frame = 0
Query:    3 GSAFASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQVCEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTK 162
            GS  A+S  GK   V+ V  LL+ S ++F+IPAS ITV E+ +LR  MPEG T +VVKN LM  A   TD+E    + TG N W F+E  ++++A IK    F+K    K       P   GV E    D  GV AI KLP+KQELY +IA +I  +PTK
Sbjct:   38 GSGVATSLEGKKSTVQTVKGLLQDSEMVFTIPASSITVAEMQKLRRSMPEGTTVKVVKNTLMERAVEGTDYEVATSLLTGANLWFFIE--DDISATIKAYNGFLKDCGKKD----THPILGGVTEGISYDTKGVEAIGKLPSKQELYAKIAGSIKAVPTK 191          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A448Z550_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z550_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.030e-32
Identity = 75/163 (46.01%), Postives = 95/163 (58.28%), Query Frame = 0
Query:    4 SAFASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQVCE-ITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKLGR 165
            S +A++  GK + VE V  LL  S ++FS+PAS+ITV E   LR  MPEG T  VVKN LM  A +DT+FE+    +  G N W F+E  E++ A IK    F K    K+  G       GV E N  D  GV AI KLP+K+ELY +IA  IN +PTKL R
Sbjct:   38 SGYATTVEGKAEKVEAVKGLLDSSQMVFSVPASFITVAESQSLRRSMPEGTTISVVKNTLMNRAVKDTEFEEAASSLLKGANMWFFIE--EDIGASIKAWNAFTKETGKKETHG----IIGGVVEGNNYDAKGVEAIGKLPSKKELYAKIAGGINAVPTKLAR 194          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A7S3LDP0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDP0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.180e-31
Identity = 69/160 (43.12%), Postives = 95/160 (59.38%), Query Frame = 0
Query:    6 FASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQVCEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKLGR 165
            +A+S  GK + V +V  LL  S +IFSIPAS +TV +  +LR  MPEG T +V+KNKLM  A   TD+ +  ++ TG N W FVE  E+++A IK  + F+K    K           GV ++   D  GV AI  LP+KQELY +IA +I  +PTK+ R
Sbjct:   76 YATSLEGKKETVAQVQGLLENSDMIFSIPASSLTVAQSQKLRQSMPEGTTVKVIKNKLMARAIEGTDYTEASQMLTGANMWFFVE--EDISATIKAYKAFIKETGKKD----THDIFGGVMDQTYYDASGVDAIGNLPSKQELYAKIAGSIKAVPTKVAR 229          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: B7G672_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G672_PHATC)

HSP 1 Score: 114 bits (286), Expect = 7.830e-29
Identity = 63/157 (40.13%), Postives = 87/157 (55.41%), Query Frame = 0
Query:    6 FASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQVCEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTK 162
            +A+S  GK   V +V  LL  S ++F+IPA  ITV +   LR  MP G T ++VKNKLM  A   TD+     +  G N W F+E  E++   +K    F+K    ++    + P   GV E N  D  GV AI KLP+KQ+LY +IA +I  +PTK
Sbjct:    7 YATSLEGKKNTVTKVQSLLDSSQMVFTIPAGSITVAQTQALRRSMPSGTTVQIVKNKLMARAVEGTDYAVATSLLQGANAWFFIE--EDIGGTLKAYNAFLKNFGKRE----SHPILGGVIEGNTYDAAGVEAIGKLPSKQDLYAKIAGSIKAVPTK 157          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A5J4Z5L2_PORPP (50S ribosomal protein L10 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5L2_PORPP)

HSP 1 Score: 114 bits (285), Expect = 2.600e-28
Identity = 65/165 (39.39%), Postives = 99/165 (60.00%), Query Frame = 0
Query:    5 AFASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDF---EQVCEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKLGRS 166
            A AS+   K+K+V EVS  +++S+++ S+P   +TV +V  L+  +PEG T R VKN +++ A  DT++   E   E+T G N W+F+  EE++   ++ I  F+K      K         GVF     D  G++A+SKLPTKQELYQ+IAV IN + TK+ R+
Sbjct:   35 ACASALEKKSKLVSEVSATMQQSTMVLSLPLEGLTVKQVNELKAAVPEGVTVRCVKNTIVKRAVADTEYSVLESGSELTKGHNLWVFIP-EESVRGTVEGITGFLK----TSKKADTNAINGGVFGGEAYDADGIVALSKLPTKQELYQQIAVGINQVNTKVARA 194          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A7S4EQC8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EQC8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.450e-27
Identity = 68/163 (41.72%), Postives = 89/163 (54.60%), Query Frame = 0
Query:    4 SAFASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQV-CEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKLGR 165
            S FA++  GK   V+ V ELL  S +IFS+PA  +TV E   LR  MPEG T  VVKN LMR A   T++E+    +  G N W F+E  E++ A IK    F K     +          G+ E    D  G+ AI KLP+K+ELY +IA  +N +PTKL R
Sbjct:   36 SGFATTVEGKKVKVDAVKELLDTSQMIFSVPAGEVTVAESQTLRRSMPEGTTISVVKNTLMRRATEGTEYEEATAPLLKGPNMWFFIE--EDIGASIKAWNAFTKEAAKTE----THSINGGIVEGTNYDAAGIEAIGKLPSKKELYAKIAAGVNAVPTKLAR 192          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A835YRM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.890e-27
Identity = 66/158 (41.77%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    8 SSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDT-DFEQVC-EITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKL 163
            S+RAGK   +  V E L K+++IF+IP+S + VN V  +R  +P G   RVVKNKLMR+A      +E V  ++T G N W FVE  ++L+  I   ++F+K ++ K         + GV E   +D  GV AIS LP+K ELY+RIAV +  +PTK+
Sbjct:   48 STRAGKLATIASVKEDLAKATMIFAIPSSQLKVNSVTDMRKKLPAGTKARVVKNKLMRLAVEGAPQWEAVVGDMTKGENMWFFVE--DDLSESITVAKDFIKVVNKKD----THAPKFGVLEGKALDAAGVEAISNLPSKTELYRRIAVGVKAVPTKI 199          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A0G4GLP8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLP8_VITBC)

HSP 1 Score: 114 bits (284), Expect = 2.580e-27
Identity = 63/160 (39.38%), Postives = 99/160 (61.88%), Query Frame = 0
Query:    7 ASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQVCEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKLGRS 166
            A+++ GK   +++ S+LL  ++L+F++  S +  NE V+LR  +PEG     VKN+L+R+AA+ TDFE      TG + ++FV   E+    ++ ++ F KGM   ++       + G F+  V+D  GV AISKLPTK EL Q+IAV IN++PT+L  S
Sbjct:   85 ATTKEGKQATIDKFSDLLGDTNLLFALEGSKLGPNERVKLRRSLPEGTKIHTVKNRLLRVAAKGTDFEDYANGATGQSLYVFVT-HEDYKGVMEALKQFGKGMPDFRE---HNVIKGGSFDSTVLDAEGVDAISKLPTKLELIQKIAVLINMVPTRLATS 240          
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Match: A0A7S2ZLQ0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLQ0_9RHOD)

HSP 1 Score: 112 bits (279), Expect = 5.100e-27
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 0
Query:   19 EVSELLRKSSLIFSIPASYITVNEVVRLRMDMPEGCTGRVVKNKLMRIAARDTDFEQVCEITTGGNFWMFVEGEENLAAPIKYIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQRIAVAINLIPTKLGR 165
            +V E L KS+L F++P    TV EV  LR  +PE      VKN L RIA  D+ ++   ++T G N W+F E E ++   ++ I+ F K    ++  G       GV E  + DG GV A+SKLP+KQ+LYQ+IA+AIN +PTK+GR
Sbjct:   90 QVREQLDKSTLAFALPLEGYTVKEVSELRNVIPENSCALAVKNTLFRIAIADSTWDVAGDLTKGSNLWIFTE-EADMKGTVEAIKKFNKEKKKEETNG----ISGGVMENTLYDGKGVEALSKLPSKQDLYQKIAIAINSVPTKVGR 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84971.16095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTB2_ECTSI8.550e-6463.2850S ribosomal protein L10 n=2 Tax=Ectocarpus TaxID... [more]
A0A1Z5K7S4_FISSO4.900e-3245.00Large subunit ribosomal protein L10 n=2 Tax=Fistul... [more]
A0A448Z550_9STRA5.030e-3246.01Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3LDP0_9STRA1.180e-3143.13Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G672_PHATC7.830e-2940.13Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A5J4Z5L2_PORPP2.600e-2839.3950S ribosomal protein L10 n=1 Tax=Porphyridium pur... [more]
A0A7S4EQC8_9STRA1.450e-2741.72Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A835YRM7_9STRA1.890e-2741.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4GLP8_VITBC2.580e-2739.38Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2ZLQ0_9RHOD5.100e-2742.18Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.1730coord: 8..142
e-value: 1.9E-23
score: 85.1
NoneNo IPR availablePANTHERPTHR11560:SF839S RIBOSOMAL PROTEIN L10, MITOCHONDRIALcoord: 8..171
NoneNo IPR availableSUPERFAMILY160369Ribosomal protein L10-likecoord: 10..177
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 9..106
e-value: 2.6E-15
score: 56.4
IPR001790Ribosomal protein L10PPANTHERPTHR11560FAMILY NOT NAMEDcoord: 8..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84971contigH-elongata_contig84971:481..1377 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84971.16095.1mRNA_H-elongata_contig84971.16095.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig84971 481..1377 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig84971.16095.1 ID=prot_H-elongata_contig84971.16095.1|Name=mRNA_H-elongata_contig84971.16095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
MSGSAFASSRAGKTKVVEEVSELLRKSSLIFSIPASYITVNEVVRLRMDM
PEGCTGRVVKNKLMRIAARDTDFEQVCEITTGGNFWMFVEGEENLAAPIK
YIQNFVKGMDPKQKVGWAEPFRAGVFEKNVIDGPGVIAISKLPTKQELYQ
RIAVAINLIPTKLGRSIKLVPTKVGRAVRLAFAEEGAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001790Ribosomal_L10P