prot_H-elongata_contig8497.16094.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8497.16094.1
Unique Nameprot_H-elongata_contig8497.16094.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
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BLAST of mRNA_H-elongata_contig8497.16094.1 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.580e-7
Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 0 
Query:   63 GGKIPPPTSSVGEAGIGAGVTKLSLDKKVALLKLKLREA 101
            G KIPP   + GEAG  AGVTKLSLDKKVALLKLKLREA
Sbjct:  236 GAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREA 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8497.16094.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT06_ECTSI2.580e-779.49RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8497contigH-elongata_contig8497:4740..6224 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8497.16094.1mRNA_H-elongata_contig8497.16094.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8497 3521..6248 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8497.16094.1 ID=prot_H-elongata_contig8497.16094.1|Name=mRNA_H-elongata_contig8497.16094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MLRKRPRPSVRFTGASCTAGRCECASWRSRGPAGWTTPRVPPPTVAASGR
RPLAQDSGERRAGGKIPPPTSSVGEAGIGAGVTKLSLDKKVALLKLKLRE
ANGKST*
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