prot_H-elongata_contig84649.16068.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig84649.16068.1
Unique Nameprot_H-elongata_contig84649.16068.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length123
Homology
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BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Match: A0A6H5JXD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD5_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.300e-45
Identity = 74/122 (60.66%), Postives = 93/122 (76.23%), Query Frame = 0 
Query:    1 GARRGDLPYGEDVREFMGTKMAWESLSKDLEALMRYRFFRDKDMVRTRLSSIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPFLRRDFHWEAVDLDNWMKGNAFW 122
            GA+RGDLP   +  E  G+K   +S+ +D++A+ RYR  +D+D++   LSSIRKTT+QVDVDI C ETFFV+DDRTE++VQG KA   R HRLRLE SPFL+RDF W  VDLD+WMKGN FW
Sbjct:  231 GAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVSKDRDVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEIVQGSKAFAVRKHRLRLESSPFLKRDFQWSVVDLDDWMKGNTFW 352
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BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Match: D8LFT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.560e-21
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 0 
Query:    1 GARRGDLPYGEDVREFMGTKMAWESLSKDLEALMRYRFFRDKDMVRTRLSSIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPFLRRDFHWEAVDLDNWMKGNAFW 122
            GA+RGDLP   +  E  G+K   +S+ +D++A+ RYR  +D+  +   LSSIRKTT+QVDVDI C ETFFV+D+RTE+V                              VDLDNWMKGN FW
Sbjct:  248 GAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVNKDRAGLDKPLSSIRKTTVQVDVDIGCTETFFVSDNRTEEV------------------------------VDLDNWMKGNTFW 339
[Close]
BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Match: D7FYL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.610e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 0 
Query:   45 VRTRLSSIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPFLRRDFH----WEAVDLDNWMKGNAF 121
            +R  L+     T QVDVD+ C ETF+V D  T +++QG K    R HR+RLE    + +       W+ +DLD+W+KGNAF
Sbjct:  258 IRNALAGNVTVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRVRLESCLLMEQAIEQPHIWKVIDLDDWLKGNAF 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXD5_9PHAE6.300e-4560.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFT8_ECTSI2.560e-2144.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYL0_ECTSI1.610e-1241.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84649contigH-elongata_contig84649:1612..2582 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84649.16068.1mRNA_H-elongata_contig84649.16068.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig84649 1612..2582 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig84649.16068.1 ID=prot_H-elongata_contig84649.16068.1|Name=mRNA_H-elongata_contig84649.16068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
GARRGDLPYGEDVREFMGTKMAWESLSKDLEALMRYRFFRDKDMVRTRLS
SIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPF
LRRDFHWEAVDLDNWMKGNAFW*
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