prot_H-elongata_contig8434.16047.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8434.16047.1
Unique Nameprot_H-elongata_contig8434.16047.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length2207
Homology
BLAST of mRNA_H-elongata_contig8434.16047.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 1477 bits (3825), Expect = 0.000e+0
Identity = 1049/2423 (43.29%), Postives = 1312/2423 (54.15%), Query Frame = 0
Query:    1 LDDDVQVEPFHVHINPSFLQSLTSYVTPILFDEGSPEAVEVPFPHPRS-LFAALHRSGATPSPCPGRGCNFTSRSGE---DLGQAAGL------GDR-GIEFERSARTASASVRLLSSQLSLELASSHPGGAAFVVSTSHVFIRAITWRSDAARGSS-GSVAEGERRPAKTGVQAGPEMFARLTRVTCSVKCCRGGGRDGASVISSGGIAVAPLSSVPVEGDVRLDQQVLTPLDVDVHVTR----------SVSSGLSLGGTYF-----WHAGVAVDELSLKLSAAHTQSLELLAKAFLPVVAAAERAAAELSRMGNDQSAPVGSRN-AKVRRADDLLELDRVDSVESSGEAPA-KPEPGQAVFYDM---------RGMSAAVTAADLWGAAQSPSE---KQRGD-----GWVKCVEWCYQGLRRVVQVVLPYAPLRGSAQLYEGLVLDSLEVELRFRDPLTGAFVTATRFSVPCNKSRGSDAPGRPRPTVEPAQPCFARTWQLAWRIPAWLRSRA-NLSAPLDPSAVSNWSSILSRGLSVRSSPASPASCPSHISATLVTKRLTLALLTDSEPSSKS------WTSCSSLPRRSS---FLQSEEIMRITASDVHAHAEKDVGVASATVWAARGSALVNVEVQDFGNFLRLPLVSHGLLEWNISGRVRGKDKSNEGGGVRGDGDGGDLLSPHRPVVAVAAELRDAVVSVSVTAVQCLDRCIGEFSLRRTSARAPTREAGEKSAITAKAATVGIEAGATGKRQSRRRSSNRYVIENLTDRTLWFGQVSTTETLLLRTGEEISYRWRKIP-AXXXXXXXXXXXXXXXXXXXXXXXXH--------YHGSGND----LGVWTEPFVADQAGAFMRLLRSAEPRERAGAEPRSMYGDEEDGMALPLWIAVTKEGLVTRISLHGEWVFTNHLPQEVQVAWATSVGVGNAGRGSSEPAGTRGGLTLVGCGPDKESDGLDPGQEAEVPLPPSSSALTACIPSRGVHAGEGKGRISELMLEFRLAAPGASAVVGSVGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISRRGSDITEASEAESVSDAAASVRPWAVTRQSEWVEPRPGIHVALISCASPEPGSSGFWFWCVASRQTSRLSDCAACVSRLKRHRCHLGQMRIDLRPVAVVWNRCSQPVRAVLTGRGSGRDWPECAVHAETPGTVGHS-QLRGASGKEEAQVYSHERRRVVSPCRPSRWKPGVQPGGRVAVCGNPFVDYDLTLSLPGKERKAEVRPLFVSVPSELLSRRCASSWLPLHGRALVDNVLCPLVVVASRVVDDHWPSLSLRVYPGLSVQNYLPVPLSLRVVFERPLPDDVIDGEQAAGSGCNYSVVGRRESSQGGAANDQSEDSGAPLLRSEVSGENASSTWTPLSGNIDGGSGVVLQDTSPSSR---RVTQMFRVPAESRHSAWDMFDGN-GVPIPYLLSGVSMDMGLDDSAGKSTAFVGTSGRA-FDTEVTEAVSAASKPGAV-----ATRRSRTLKFRLDGELNELVLVPWMPDSGAVIPAFVKMERELVFGGVELIRLEVHPRVVVHNATSFSVSVSLLRRANALKGSGGDGDDYDQAIPSCRVTLAPGGTGSSMAVLAMPGKSLY-------------------EEEGEDRRLDDPEGRWASPGSRGRISRSLAWLLSSTTYSAALDQPPGFCANLEVALEREE------------IKGPDAPHTI-PTGDR---NGDQEGARDHERLNDVTLSRGRPLTVKRKSDVVSLHEASGGAPLRFKPAHLTVAADGGRRMIGVCVVATETSLGTEATP-TRHVVLHHPP-PSLVVVNRSAGAVTLLFECGALVEVGPGSSAEHSWESAPREESGGTDG-------------------------------------------------ASSSGTPAQXXXXXXXX---------------RLNCA----GSTTPQKA-RPPSTLGGDATLQHWFQCKGGSRADESLSWSDPYWVARGVQVIRF----AKHAPPTGDREFHSEGSMYFPGGEEE---------TREVQMHVMERVGGFVMSFAEGGFEDSRLDTDDIEDAPAVAGN---SRGVLRRWASTVEHHMVLSVSGTIFQLLDETNLQSVVGSDQA--ESGARSGAASPNGPGMAGWIGGTWDGPGGLLSDGVSAQLPTAAIPTILSVFLDATSIRMWRAAPAARPGMSTLDLERSWHLKSRIGVDISLGTLQIDNHVAGHNLPVLFCFRKGGRLVDGEGEGRGDGGHE--RGDCRLSISLILAEPLEHSGVLPYMEKLYVRSAPIDVCLEDVLVEPLTQFTCLGGSVVDVSNFSTGDGGSPSRWSRG-NPAGPP---------------FPDALGSVLETRLFIQHVDIGALVVRATVQGHIPGKQV 2201
            LD  +QV+PF +H+NPS L+S T+Y+ P+ F EG PE  EV FP  +  L    H S + P        N  +R G+   D G A G+      G R    FE+SA TAS SVR+L+SQ++LEL SS+PGG AF+ STSHVF+RAITW SDA R ++ GS  EG       GVQAGPE+FARL+RV C VKC +  G   A+V +     V P SS P   D +L   VL P DVDVH+TR          ++++G++   + +     WHAGV VDEL L+ +  H +SLELL+  FLP V AAE  A EL R G  +    G +  A   R DDL  LDRV+  E +G A A KP PGQAVFY +         R + A+   A   G A+   E   ++ G+     GWV C EW Y GLRRV QV  P  PL GS  L EGL + SLEVEL F DPLT           P   S      G  R T+EP+QP  ARTW+L+WR+P+WLR +A        P A+S WSS L R LS+RSSP+ P   PS++SATLV +RLTLALLT+    S+S          S   RR     F+Q EEI+R+  +DV+  AE  +     +V AARGSA+V  +VQDF NFLRLPL+SH  ++ ++S        S  GG  R   +G  LLSP RP+ + A ++  AVVS+SVTA+QC+D+CI E + R+ S    TR +   +A  AK + V +       R+ R+RS  RY+I N TDR LWFGQVSTTETL LR GEE  YRWR IP                          H        Y G+G++     G WTEPF  D  G F                      +E D + LPLW+ V K GL TRI+ HGEWVFTNHLPQE+QVAW TS GVGNAGR   EP GTRGGL+L  C     +DG           P S SALTA   S G    +G GR+SELMLEFRL+ P A+A VGSVGPP                               +  RRG D  E  +     +  +S  PW VTRQSEWV+ RP + +ALISCAS +PG SGF FWCVASRQ SR ++          HR +LGQMRIDL P+A+VWN  S P+RAVL  R  G  WPE     + P T+  +   +G +G       + + R   S    SR    ++PGGR AVC  PFVDYDL ++  G     +  P  VSVP+ELLSRRC S+WLPLH RAL DN+L PLVVVASR++D +WPSLSLRVY GLSV+N+  VPLSLR  F RPL     DGE +A       V  R E  +              LLR   S           S ++DGG G    D     R   RV++MFR  AES HSAWDMF G+ G  IP+LL  VS+D+GLD     S +    S RA + + V    SA   PG       A RRSR LK  L  ELNELVLVPW   SG V+P    +ERE+V GGVELIRL ++PRVVVHNAT   VS+SLL  A+        G   ++A+P CRV L P G+GS M +LA+PG+                      E  GE R    P      PG  GR+SR    +LSS +Y A+   P GF A+LE+A   ++            + G  AP T  P G+     G  + ++D    N++               V SL E S G+ L   P+ LTV   G R +     V    +  T A P  RHV+++  P P L + NRS   VTLL +CGALVEV PG + EHSW   P  ++ G++G                                                 +S+  +P Q       X               R +C     GS   +KA R P  LGGDATLQHWFQCKGG++ D  LSWSDP WVARGVQV+RF      +    G R     GS    GG ++          REVQ+HV+ER GGFVMSFAEGGFE +  D   + ++ A   +   SRGVL RWAST+  H+V++VSG   QLLD++NLQ+   + Q    + A + AAS    GM GW+GGTW  PGGL SDG SA LP AAIP I+SVF+DA+S+R+WRAAPA RPGMS+LDLERSWHLK R+G+D+ LGTLQID+HVAGH LPV+FCFR+GG LV+    G G  G +  +G CRL++SL+LAE  E S V  Y+EK+ + SAPIDVC ED L+ PL          + +   S GD  SP  ++   N  GP                 P ALG+ +  RLFIQ VDIGALVVRATVQG+IPGKQV
Sbjct: 2068 LDVVLQVQPFDIHVNPSILRSFTAYIAPVPFVEGFPEEEEVLFPQRQPPLTTPCHSSSSKPH-------NSATRHGDGAADDGAAGGVECASSSGQRLSTNFEKSALTASGSVRVLASQVTLEL-SSYPGGPAFMASTSHVFLRAITWPSDAMRAAARGSSGEG-------GVQAGPEVFARLSRVECRVKCGQESGGSAATVQNRA--RVGP-SSQP---DDQLGDTVLKPFDVDVHLTRPGASSARGVAALAAGVNTTASEYPVTQGWHAGVYVDELYLRCAPLHVRSLELLSDLFLPAVTAAELTAVELGRGGRSRGTASGLQGLAGGGRIDDLAALDRVECREPAGHADAVKPGPGQAVFYGVGTTPQGGRPRRVGASSDGAGASGVAEEEKEAGGRKEGEEEGRGGWVHCCEWRYWGLRRVAQVAFPRLPLCGSVPLLEGLAVTSLEVELSFVDPLTET------VKAPNGSSDDFVLAGGSRVTIEPSQPILARTWRLSWRVPSWLRFKAAGAGGAPKPPAISAWSSALLRTLSIRSSPSGPVVGPSYVSATLVAQRLTLALLTEGGAISRSSSXXXXXAPVSPSRRREGLGVFVQPEEIVRVVIADVNFFAEASLAARWLSV-AARGSAVVAADVQDFSNFLRLPLLSHAAVKLDVS------TSSVRGGTGRMAAEGESLLSPFRPIASGAVDVNGAVVSMSVTAMQCIDQCIAELT-RKPSDEPATRRS--TTAAEAKPSVVAVPTPVPPSRRPRQRSK-RYIITNHTDRNLWFGQVSTTETLFLRAGEETLYRWRTIPRTLAAGAAGRKGDDASRLVLMLRLALHRVSGSGGGYAGAGSERGGWYGAWTEPFPVDHVGTFK---------------------EESDLVTLPLWVEVDKNGLETRIAFHGEWVFTNHLPQEIQVAWVTSAGVGNAGRCLVEPTGTRGGLSLEACSTSGRADGSL--------HPVSCSALTASSSSLGTGQAQG-GRLSELMLEFRLSTPDAAAFVGSVGPPPVATEDLGGHPAAARDADGLGDGG-------SYDRRGLD-DELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGGWPE-----QPPATLAEAVDEQGGAGTGHTADRNDDPRANYSL---SRTTSAIRPGGRTAVCQRPFVDYDLAVASTGTAA-CQAAPFLVSVPAELLSRRCESTWLPLHSRALSDNILSPLVVVASRLLDANWPSLSLRVYSGLSVENHTSVPLSLRADFIRPLLGS--DGEPSAQQPAEAPVTERGEPERAQTEXXXXXXXXXXLLRRRGS----------ESVSVDGGGG----DAGSGRRAVARVSRMFRAGAESCHSAWDMFHGSEGFSIPFLLPHVSLDIGLDSREEASPSPATASVRAGWSSLVPPGRSADEVPGGPTPPTPAERRSRKLKVSLAEELNELVLVPWEASSGVVLPVLATLEREVVLGGVELIRLALYPRVVVHNATGVPVSLSLLGGAHVAAEDKSGGGARNEALPMCRVRLTPEGSGSRMNLLAIPGERALPGLDASHHGFPQSAAGREGERAGEGRGF--PLENVPRPGLLGRLSR----ILSSGSYKASSAHPAGFSADLEMAFGWDDRADQASAADSGAVDGRGAPPTARPAGNEAASTGATKWSQDGCGANELP--------------VFSLCEPSAGSSLASHPSSLTVPGGGQRAVRVYIAVEPPGAEPTSAAPLARHVLIYRDPQPDLTICNRSTDTVTLLLDCGALVEVAPGGTVEHSWRKEPTRDANGSNGXXXXXXXXXXXXXXXXXXXXXXXXASMTGRHSRRWSEDSRGVVDTPTPMSSAPSSPVQARPGTAAXXXXXXXXXTGAALDARRSCVSGPGGSPALRKAARAPGKLGGDATLQHWFQCKGGAKGDVFLSWSDPLWVARGVQVLRFDGQNGSNEESWGHRGIAEGGSGEGGGGRDDGRKGFGTGSAREVQVHVVERAGGFVMSFAEGGFEGAAADCVGVVESGARDNHHLESRGVLGRWASTLGQHVVVTVSGVSLQLLDDSNLQAFAANGQGGNSTAAAARAASDRLGGMDGWVGGTWAEPGGLPSDGASAHLPAAAIPAIVSVFVDASSVRLWRAAPAVRPGMSSLDLERSWHLKDRVGIDVCLGTLQIDSHVAGHRLPVIFCFREGGPLVEVSEIGMGMPGDDQVKGGCRLAMSLVLAESWEDSRVPSYLEKVSIHSAPIDVCFEDSLLPPLLLLL----ERLGIGAASPGDRSSPYPFAASANDRGPGSAAQGGLPSERSPQLLPPALGANVVPRLFIQRVDIGALVVRATVQGYIPGKQV 4356          
BLAST of mRNA_H-elongata_contig8434.16047.1 vs. uniprot
Match: D8LCN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN3_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 2.550e-67
Identity = 162/367 (44.14%), Postives = 192/367 (52.32%), Query Frame = 0
Query:  789 WTEPFVADQAGAFMRLLRSAEPRERAGAEP--RSMYGDEEDGMALPLWIAVTKEGLVTRISLHGEWVFTNHLPQEVQVAWATSVGVGNAGRGSSEPAGTRGGLTLVGCGPDKESDGLDPGQEAEVPLPPSSSALTACIPSRGVHAGEGKGRISELMLEFRLAAPGASAVVGSVGPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTISRRGSDITEASEAESVSDAAASVRPWAVTRQSEWVEPRPGIHVALISCASPEPGSSGFWFWCVASRQTSRLSDCAACVSRLKRHRCHLGQMRIDLRPVAVVWNRCSQPVRAVLTGRGSGRDWPE---------------CAVHAETPGTVGHSQLRGA 1138
            W  P    +  A  RLLR AE   + GA+   R     E D + LPLW+ V K GL TRI+ HGEWVF N+LPQE+QVAW TS GVGNAGR   EP GTR GL+L  C     + G      +  PL  S SALTA   S G     G+ R+SELMLEFRL+ P A+A VGSVGPP                               +   RG D  E  +     +  +S  PW VTRQSEWV+ RP + +ALISCAS +PG SGF FWCVASRQ SR ++          HR +LGQMRIDL P+A+VWN  S P+RAVL  R  G  WPE                  H  TPG     +LR A
Sbjct:   10 WARPSEEAELAAA-RLLRGAEAEGQVGADASARGAGHQESDFVTLPLWVEVVKNGLETRIAFHGEWVFANYLPQEIQVAWVTSAGVGNAGRCLVEPTGTREGLSLEACATSGRAGG------SLHPL--SCSALTASSSSPGAGQAHGE-RLSELMLEFRLSTPDAAACVGSVGPPPVATEDSAGHPAAARDAGGFADGG-------SFDSRGLD-DELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGGWPEQPPATLAEAVDEQGSLVAHPPTPGVDRSVRLRRA 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8434.16047.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE0.000e+043.29VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
D8LCN3_ECTSI2.550e-6744.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8434contigH-elongata_contig8434:186..9944 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8434.16047.1mRNA_H-elongata_contig8434.16047.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8434 186..9944 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8434.16047.1 ID=prot_H-elongata_contig8434.16047.1|Name=mRNA_H-elongata_contig8434.16047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=2207bp
LDDDVQVEPFHVHINPSFLQSLTSYVTPILFDEGSPEAVEVPFPHPRSLF
AALHRSGATPSPCPGRGCNFTSRSGEDLGQAAGLGDRGIEFERSARTASA
SVRLLSSQLSLELASSHPGGAAFVVSTSHVFIRAITWRSDAARGSSGSVA
EGERRPAKTGVQAGPEMFARLTRVTCSVKCCRGGGRDGASVISSGGIAVA
PLSSVPVEGDVRLDQQVLTPLDVDVHVTRSVSSGLSLGGTYFWHAGVAVD
ELSLKLSAAHTQSLELLAKAFLPVVAAAERAAAELSRMGNDQSAPVGSRN
AKVRRADDLLELDRVDSVESSGEAPAKPEPGQAVFYDMRGMSAAVTAADL
WGAAQSPSEKQRGDGWVKCVEWCYQGLRRVVQVVLPYAPLRGSAQLYEGL
VLDSLEVELRFRDPLTGAFVTATRFSVPCNKSRGSDAPGRPRPTVEPAQP
CFARTWQLAWRIPAWLRSRANLSAPLDPSAVSNWSSILSRGLSVRSSPAS
PASCPSHISATLVTKRLTLALLTDSEPSSKSWTSCSSLPRRSSFLQSEEI
MRITASDVHAHAEKDVGVASATVWAARGSALVNVEVQDFGNFLRLPLVSH
GLLEWNISGRVRGKDKSNEGGGVRGDGDGGDLLSPHRPVVAVAAELRDAV
VSVSVTAVQCLDRCIGEFSLRRTSARAPTREAGEKSAITAKAATVGIEAG
ATGKRQSRRRSSNRYVIENLTDRTLWFGQVSTTETLLLRTGEEISYRWRK
IPAPVPVPVRGGAGGGSRLGLLLRLALHYHGSGNDLGVWTEPFVADQAGA
FMRLLRSAEPRERAGAEPRSMYGDEEDGMALPLWIAVTKEGLVTRISLHG
EWVFTNHLPQEVQVAWATSVGVGNAGRGSSEPAGTRGGLTLVGCGPDKES
DGLDPGQEAEVPLPPSSSALTACIPSRGVHAGEGKGRISELMLEFRLAAP
GASAVVGSVGPPPMPAAGAATASPAAASAAKDRGGGRNDGGGGTISRRGS
DITEASEAESVSDAAASVRPWAVTRQSEWVEPRPGIHVALISCASPEPGS
SGFWFWCVASRQTSRLSDCAACVSRLKRHRCHLGQMRIDLRPVAVVWNRC
SQPVRAVLTGRGSGRDWPECAVHAETPGTVGHSQLRGASGKEEAQVYSHE
RRRVVSPCRPSRWKPGVQPGGRVAVCGNPFVDYDLTLSLPGKERKAEVRP
LFVSVPSELLSRRCASSWLPLHGRALVDNVLCPLVVVASRVVDDHWPSLS
LRVYPGLSVQNYLPVPLSLRVVFERPLPDDVIDGEQAAGSGCNYSVVGRR
ESSQGGAANDQSEDSGAPLLRSEVSGENASSTWTPLSGNIDGGSGVVLQD
TSPSSRRVTQMFRVPAESRHSAWDMFDGNGVPIPYLLSGVSMDMGLDDSA
GKSTAFVGTSGRAFDTEVTEAVSAASKPGAVATRRSRTLKFRLDGELNEL
VLVPWMPDSGAVIPAFVKMERELVFGGVELIRLEVHPRVVVHNATSFSVS
VSLLRRANALKGSGGDGDDYDQAIPSCRVTLAPGGTGSSMAVLAMPGKSL
YEEEGEDRRLDDPEGRWASPGSRGRISRSLAWLLSSTTYSAALDQPPGFC
ANLEVALEREEIKGPDAPHTIPTGDRNGDQEGARDHERLNDVTLSRGRPL
TVKRKSDVVSLHEASGGAPLRFKPAHLTVAADGGRRMIGVCVVATETSLG
TEATPTRHVVLHHPPPSLVVVNRSAGAVTLLFECGALVEVGPGSSAEHSW
ESAPREESGGTDGASSSGTPAQSTPASTTPRLNCAGSTTPQKARPPSTLG
GDATLQHWFQCKGGSRADESLSWSDPYWVARGVQVIRFAKHAPPTGDREF
HSEGSMYFPGGEEETREVQMHVMERVGGFVMSFAEGGFEDSRLDTDDIED
APAVAGNSRGVLRRWASTVEHHMVLSVSGTIFQLLDETNLQSVVGSDQAE
SGARSGAASPNGPGMAGWIGGTWDGPGGLLSDGVSAQLPTAAIPTILSVF
LDATSIRMWRAAPAARPGMSTLDLERSWHLKSRIGVDISLGTLQIDNHVA
GHNLPVLFCFRKGGRLVDGEGEGRGDGGHERGDCRLSISLILAEPLEHSG
VLPYMEKLYVRSAPIDVCLEDVLVEPLTQFTCLGGSVVDVSNFSTGDGGS
PSRWSRGNPAGPPFPDALGSVLETRLFIQHVDIGALVVRATVQGHIPGKQ
VRGMMH*
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