prot_H-elongata_contig84160.16030.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig84160.16030.1
Unique Nameprot_H-elongata_contig84160.16030.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length146
Homology
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 2.510e-35
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 0
Query:    1 MSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSL 143
            M L     WK A  KEI+SL++  VY++VP + VP    ++G++WV K+K + T K+RLV +G  QVPG   GGTF  VCRLQSIRM+ AIAAE   ++  +DV+TAFL AD++E VFV+M PGYE  N   + L   L+KSL
Sbjct:  309 MELPETKLWKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSL 451          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.500e-33
Identity = 70/136 (51.47%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    9 WKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 144
            W  AA++EI SLK   V+++VP + VP  +K + ++WV K KADG+ K RLVVQG  QVPG+  G TF  VCRLQSIRM+   A +   E+  +DV TAFL AD+ E VFV+  PG+E  NK G  L   L+KSLY
Sbjct:   65 WNTAAEREIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLY 200          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.650e-32
Identity = 68/136 (50.00%), Postives = 89/136 (65.44%), Query Frame = 0
Query:    9 WKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 144
            W  AA++EI SLK   V+++VP + VP  +K + +RWV K K DG+ K RLV QG  QVPG+  G T+  VCRLQSIRM+  IA +   E+  +DV TAFL AD+ E VFV+  PG+E  +K G  L   L+KSLY
Sbjct:  851 WNAAAEREIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLY 986          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.710e-31
Identity = 66/139 (47.48%), Postives = 89/139 (64.03%), Query Frame = 0
Query:    6 AAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 144
            A  W  AA++E++SL +  VY++VP S VP  +K + ++WV K KADGT K R+V QG  QVPG+  G T+  VCR+QS+RM+  I  E       +DV TAFL AD+ EEVFV+  PG+E  +K G  +   L KSLY
Sbjct: 1163 ATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLY 1301          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.720e-31
Identity = 66/139 (47.48%), Postives = 89/139 (64.03%), Query Frame = 0
Query:    6 AAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 144
            A  W  AA++E++SL +  VY++VP S VP  +K + ++WV K KADGT K R+V QG  QVPG+  G T+  VCR+QS+RM+  I  E       +DV TAFL AD+ EEVFV+  PG+E  +K G  +   L KSLY
Sbjct: 1328 ATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLY 1466          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.030e-31
Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 0
Query:    6 AAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 144
            A  WK A  KE++SLK+H V ++VPI  +P   K +G+RW+ K+KA G  K+RL VQG  Q  GI  GGT+  V R  S  +++AIAAE G+ +  +DV TAFL ++V+EEV+V+   GYE  ++  G+ L   LKKSLY
Sbjct:    6 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLY 145          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.090e-31
Identity = 67/136 (49.26%), Postives = 88/136 (64.71%), Query Frame = 0
Query:    9 WKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 144
            W  AA++EI SLK   VY++VP + VP  +K + ++WV K KA G+ K RLV QG  QVPG+  G T+  VCR QSIRM+  IA +   E+  +DV TAFL AD+ E VFV+  PG+E  +K G  L   L+KSLY
Sbjct:  474 WNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLY 609          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.160e-30
Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = 0
Query:   14 KKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 144
            K+E++SL N  VY++VP S VP  +K + ++WV K KADGT K R+V QG  QVPG+  G T+  VCR+QS+RM+  I  E       +DV TAFL AD+ EEVFV+  PG+E  +K G  +   L KSLY
Sbjct:  150 KREMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLY 280          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.350e-30
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = 0
Query:    1 MSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 144
            M+  ++  W++A  KE+ SL +H V +++P+S VP+   ++GTRWV ++K DG  K+R+VVQG  Q  GI    TF  VC++ S R+++AIAA  G+ +  +DVQTAFLN  + E+V+    PG+E+I  + G  L   LKKSLY
Sbjct:  651 MNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLY 795          
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JLX1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 9.980e-30
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 0
Query:    6 AAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYE 126
            A  WK A  KE++SLK+H V ++VPI  +P   K +G+RW+ K+KA G  K+RL+VQG  Q  GI  GGT+  V R  S  +++AIAAE G+ +  +DV TAFL ++V+EEV+V+   GYE
Sbjct:    3 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE2.510e-3550.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWT4_9PHAE2.500e-3351.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE6.650e-3250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH6_9PHAE1.710e-3147.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.720e-3147.48Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JVC8_9PHAE3.030e-3147.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE4.090e-3149.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE4.160e-3048.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAG6_9PHAE9.350e-3043.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLX1_9PHAE9.980e-3047.93Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 34..145
e-value: 6.3E-27
score: 94.8
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..133
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 4..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84160contigH-elongata_contig84160:1540..1977 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84160.16030.1mRNA_H-elongata_contig84160.16030.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig84160 1540..1998 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig84160.16030.1 ID=prot_H-elongata_contig84160.16030.1|Name=mRNA_H-elongata_contig84160.16030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIK
ADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIY
MIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLYVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like