prot_H-elongata_contig8400.16011.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig8400.16011.1
Unique Name	prot_H-elongata_contig8400.16011.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	127

Homology

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BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KQ40_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ40_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.570e-42
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ G  +RD QT + + RCL+KDG+F  S+W ++ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:    1 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGESERDGQTLAGVTRCLLKDGDFPPSMWWQLMLTAAYLFNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 119

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BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KHY1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY1_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 7.960e-42
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G  IETIRCDKGGE +G EF   C  + I +EY ATNTPQQ+ V +RD Q+ + + RCL+KDG F  S+W E+ LTA YL NR P+S LGGATPYSK+HKK  D++GLR IG
Sbjct:  106 MCVAAAGGYLIETIRCDKGGEKTGSEFRDYCKNSAIKLEYAATNTPQQSAVLERDGQSLAGVTRCLLKDGVFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHKKSPDLSGLRVIG 224

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BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.470e-41
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G +IETIRCDKGGE +G +F   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W EI LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:  112 MCVAAAGGYQIETIRCDKGGENTGSDFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 230

[Close]

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.170e-41
Identity = 71/119 (59.66%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:  158 MCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276

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BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 4.520e-41
Identity = 71/119 (59.66%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:   24 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 142

[Close]

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.820e-40
Identity = 71/119 (59.66%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:  158 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276

[Close]

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.580e-40
Identity = 71/119 (59.66%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:  158 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276

[Close]

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.590e-40
Identity = 71/119 (59.66%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:  158 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276

[Close]

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KV62_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV62_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.900e-40
Identity = 66/119 (55.46%), Postives = 81/119 (68.07%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G  I+ IRCDKGGE +G EF   C  + I +EY ATNTPQQ GV  RD Q+ + + RCL+KDG+F  S+W E+ LTA YL NR P+  LGGATPYSK+H K  D++GLR IG
Sbjct:   49 MCVAAAGGYWIKAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSGRDGQSLAEVTRCLVKDGDFPPSMWGELMLTAAYLLNRSPHLALGGATPYSKLHNKSPDLSGLRVIG 167

[Close]

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 6.920e-40
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 0

Query:    1 MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 119
            M V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ G  +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:  534 MCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 652

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot

BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KQ40_9PHAE	2.570e-42	57.98	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KHY1_9PHAE	7.960e-42	57.98	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KF63_9PHAE	1.470e-41	58.82	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KCM0_9PHAE	3.170e-41	59.66	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5K5H2_9PHAE	4.520e-41	59.66	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	2.820e-40	59.66	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	3.580e-40	59.66	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	3.590e-40	59.66	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KV62_9PHAE	6.900e-40	55.46	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KT84_9PHAE	6.920e-40	58.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..120 e-value: 2.8E-14 score: 54.8
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 9..121
None	No IPR available	PANTHER	PTHR11439:SF295		coord: 9..121
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..109 score: 13.527
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 7..114

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig8400	contig	H-elongata_contig8400:9227..9607 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig8400.16011.1	mRNA_H-elongata_contig8400.16011.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig8400 8909..9607 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig8400.16011.1 ID=prot_H-elongata_contig8400.16011.1|Name=mRNA_H-elongata_contig8400.16011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNG
VFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGAT
PYSKMHKKEADMTGLRTIGTGHSSII*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf