prot_H-elongata_contig83964.16009.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83964.16009.1
Unique Nameprot_H-elongata_contig83964.16009.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length80
Homology
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BLAST of mRNA_H-elongata_contig83964.16009.1 vs. uniprot
Match: A0A6H5J638_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J638_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.670e-32
Identity = 70/80 (87.50%), Postives = 78/80 (97.50%), Query Frame = 0 
Query:    1 RGVRFRKEEQLLRAEEEAKRRMESADARRREHRRGIVRKANDANSKVKEVVFMNKLTVEDVKITLQMQLAEVERRIQLGR 80
            RGVRFRKEEQLL+AEEEAKR+ME ADARR+EHRRGIVRKANDANSKV+EV+FMNKLTVED+KITLQM+LAEV+RRIQ GR
Sbjct:  107 RGVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGR 186
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BLAST of mRNA_H-elongata_contig83964.16009.1 vs. uniprot
Match: D7G5K8_ECTSI (Scaper protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.680e-32
Identity = 70/80 (87.50%), Postives = 78/80 (97.50%), Query Frame = 0 
Query:    1 RGVRFRKEEQLLRAEEEAKRRMESADARRREHRRGIVRKANDANSKVKEVVFMNKLTVEDVKITLQMQLAEVERRIQLGR 80
            RGVRFRKEEQLL+AEEEAKR+ME ADARR+EHRRGIVRKANDANSKV+EV+FMNKLTVED+KITLQM+LAEV+RRIQ GR
Sbjct: 1210 RGVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGR 1289
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83964.16009.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J638_9PHAE1.670e-3287.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K8_ECTSI1.680e-3287.50Scaper protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83964contigH-elongata_contig83964:1307..2665 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83964.16009.1mRNA_H-elongata_contig83964.16009.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83964 1307..2665 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83964.16009.1 ID=prot_H-elongata_contig83964.16009.1|Name=mRNA_H-elongata_contig83964.16009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RGVRFRKEEQLLRAEEEAKRRMESADARRREHRRGIVRKANDANSKVKEV
VFMNKLTVEDVKITLQMQLAEVERRIQLGR
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