prot_H-elongata_contig83916.16003.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83916.16003.1
Unique Nameprot_H-elongata_contig83916.16003.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length383
Homology
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BLAST of mRNA_H-elongata_contig83916.16003.1 vs. uniprot
Match: A0A6H5K714_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K714_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 7.300e-76
Identity = 155/239 (64.85%), Postives = 174/239 (72.80%), Query Frame = 0 
Query:  144 PPPIVSLDEMARADAAEKKRKRKARPAGKKVGWADRAGKTLQVVKEFHPEDAVLVVSEAPQEDAPGVNEAALLHSQHHHTEHWAERVKREREMERKFHGKTGGRGR-RGHEGSASAGREDENARPGVAGVELAAAI-------RRKPMVPTMSWRRPGPYQEGVVHEFVITLEVESSEAESQAARTRVGLEVVYLSSGDIPPSPAEPDAASFLPVGEPCIATYEIPFYMETELEQMQLD 374
            PPPIVSLDEMARA++ EKKR RKA+PAGKKVGWADRAG+TLQVVKEFH EDA   VSE PQE    V  AA + S H    HWAERVKREREMERKFHGK+GGR + +   G ASAG E+                       +RKPMV  + WRRPGPY++GVVHE V+ LEVESSEAESQ ARTR GLE VYLSSGDIP +PAEPDAASFLPV E  +  Y+IPFYME+ELEQMQ +
Sbjct:  567 PPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQVVKEFHSEDAATAVSETPQESDSVV--AATMASHHAGHRHWAERVKREREMERKFHGKSGGRSKGKSDHGRASAGDEEXXXXXXXXXXXXXXXXXXXXXXXKRKPMVTAVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDE--VQMYKIPFYMESELEQMQAE 801
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BLAST of mRNA_H-elongata_contig83916.16003.1 vs. uniprot
Match: D8LNV8_ECTSI (TFIIS N-terminal domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV8_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 2.110e-69
Identity = 149/263 (56.65%), Postives = 167/263 (63.50%), Query Frame = 0 
Query:  144 PPPIVSLDEMARADAAEKKRKRKARPAGKKVGWADRAGKTLQ---------------------VVKEFHPEDAVLVVSEAPQE-DAPGVNEAALLHSQHHHTEHWAERVKREREMERKFHGKTGGRGRRGHEGSASAGREDENARPGVAGVELAAAI----------RRKPMVPTMSWRRPGPYQEGVVHEFVITLEVESSEAESQAARTRVGLEVVYLSSGDIPPSPAEPDAASFLPVGEPCIATYEIPFYMETELEQMQLD 374
            PPPIVSLDEMARA++ EKKR RKA+PAGKKVGWADRAG+TLQ                     VVKEFH EDA   VSE PQE D+      A  H+ H H   WAERVKREREMERKFHGK+GGR +                                       +RKPMV T+ WRRPGPY++GVVHE V+ LEVESSEAESQ ARTR GLE VYLSSGDIP +PAEPDAASFLPV E  +  Y+IPFYME+ELEQMQ +
Sbjct:  335 PPPIVSLDEMARAESEEKKRLRKAKPAGKKVGWADRAGRTLQESVEGRRLMLMNHPGTRRALQVVKEFHSEDAATAVSETPQESDSVAATTMASHHAGHRH---WAERVKREREMERKFHGKSGGRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKRKPMVTTVPWRRPGPYEKGVVHEDVLQLEVESSEAESQGARTRAGLEQVYLSSGDIPSTPAEPDAASFLPVDE--VQMYKIPFYMESELEQMQAE 592
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83916.16003.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K714_9PHAE7.300e-7664.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNV8_ECTSI2.110e-6956.65TFIIS N-terminal domain-containing protein (Fragme... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 368..383

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83916contigH-elongata_contig83916:394..2352 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83916.16003.1mRNA_H-elongata_contig83916.16003.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83916 394..2352 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83916.16003.1 ID=prot_H-elongata_contig83916.16003.1|Name=mRNA_H-elongata_contig83916.16003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=383bp
ARFFPGRKFPTRGMRGGRGSVPRGAGGVAAGRGGAATGGGGRTSGILKVS
VTPSPSSEGGVGAGKVICAAGDSDSTPAPASATTATATVAVVTGPTDSKE
VGAEVVSSAASASAQTLASAEGKSEGATPAVGGGGDGGEPAPGPPPIVSL
DEMARADAAEKKRKRKARPAGKKVGWADRAGKTLQVVKEFHPEDAVLVVS
EAPQEDAPGVNEAALLHSQHHHTEHWAERVKREREMERKFHGKTGGRGRR
GHEGSASAGREDENARPGVAGVELAAAIRRKPMVPTMSWRRPGPYQEGVV
HEFVITLEVESSEAESQAARTRVGLEVVYLSSGDIPPSPAEPDAASFLPV
GEPCIATYEIPFYMETELEQMQLDQERLEQERQ
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