prot_H-elongata_contig83209.15959.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig83209.15959.1
Unique Nameprot_H-elongata_contig83209.15959.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length305
Homology
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BLAST of mRNA_H-elongata_contig83209.15959.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 9.160e-16
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 0 
Query:  238 DGRALKKAATMPTIPRVSLLATPGSKPRGSRKCVQFQV------------------PENEGLDSDNFDSPLPEFLSNPDIRFEVS 304
            + R +KKAAT+P +PRVSLL  P ++P+G RK VQFQV                  PENEGLDSD  DSPLPEFLSNPD+RFEV+
Sbjct:  558 EARLMKKAATLPAMPRVSLLL-PSNRPKGGRKSVQFQVGIMRCDRVVVQCTATAVVPENEGLDSDTTDSPLPEFLSNPDVRFEVA 641
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BLAST of mRNA_H-elongata_contig83209.15959.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 6.510e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:  263 KPRGSRKCVQFQVPENEGLDSDNFDSPLPEFLSNPDIRFEVS 304
            +P+G RK VQFQVPENEGLDSD  DSPLPEFLSNPD+RFEV+
Sbjct:  161 RPKGGRKSVQFQVPENEGLDSDTTDSPLPEFLSNPDVRFEVT 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83209.15959.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LG27_9PHAE9.160e-1656.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB0_ECTSI6.510e-1280.95NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83209contigH-elongata_contig83209:438..2596 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83209.15959.1mRNA_H-elongata_contig83209.15959.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig83209 438..2597 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig83209.15959.1 ID=prot_H-elongata_contig83209.15959.1|Name=mRNA_H-elongata_contig83209.15959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
GRGGGGGGSSDRRGRGAEQQTHEWSDSESMEDDSSESDSAEDDDLGDDDS
DEDDDDEDDVMDGEEEEDPSPETTTTSTSTSTTTTTVKPSSAPPLYRLPS
HSSNVSSQSSNASPETEIAVVEEPATGSEGVGRQKQSSASAPLLASSSTV
STSSSSTVSSASLLSPLSPPPPLELSGQTIVGKGVLSTLKPLPLASSSSS
TAVGALKEVGVGAAVGNARQEEGAAGNREAGESAGVSDGRALKKAATMPT
IPRVSLLATPGSKPRGSRKCVQFQVPENEGLDSDNFDSPLPEFLSNPDIR
FEVST
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