prot_H-elongata_contig82819.15921.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig82819.15921.1
Unique Nameprot_H-elongata_contig82819.15921.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A6H5L6K7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.790e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:    1 MKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEIRK 38
            MKRDFLA+GRQPAG+CCAALTLATRVNRIERSKEEIRK
Sbjct:  236 MKRDFLASGRQPAGICCAALTLATRVNRIERSKEEIRK 273
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A6A0A2M7_HAELA (CYCLIN domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A2M7_HAELA)

HSP 1 Score: 47.8 bits (112), Expect = 7.790e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:    1 MKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 36
            MKRD++ TGR+PAG+C AAL +A  ++ IERSK +I
Sbjct:   42 MKRDWMQTGRRPAGICGAALFIAAHIHGIERSKRDI 77
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A5J4WUL8_9EUKA (B-related factor 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WUL8_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 2.170e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:    1 MKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 36
            MKRD++ TGR PAGVC AAL +A R++  ERS+++I
Sbjct:  221 MKRDWIVTGRSPAGVCGAALLIAARIHNFERSQKQI 256
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BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Match: A0A5J4TJR1_9EUKA (Putative transcription factor IIIB 90 kDa subunit (Fragment) n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4TJR1_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 2.170e-5
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:    1 MKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEI 36
            MKRD++ TGR PAGVC AAL +A R++  ERS+++I
Sbjct:  156 MKRDWIVTGRSPAGVCGAALLIAARIHNFERSQKQI 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82819.15921.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6K7_9PHAE6.790e-1594.74TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A6A0A2M7_HAELA7.790e-658.33CYCLIN domain-containing protein (Fragment) n=1 Ta... [more]
A0A5J4WUL8_9EUKA2.170e-558.33B-related factor 1 n=1 Tax=Streblomastix strix Tax... [more]
A0A5J4TJR1_9EUKA2.170e-558.33Putative transcription factor IIIB 90 kDa subunit ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 1..39
e-value: 3.2E-7
score: 32.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..23
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 1..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82819contigH-elongata_contig82819:414..530 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82819.15921.1mRNA_H-elongata_contig82819.15921.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig82819 387..530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig82819.15921.1 ID=prot_H-elongata_contig82819.15921.1|Name=mRNA_H-elongata_contig82819.15921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MKRDFLATGRQPAGVCCAALTLATRVNRIERSKEEIRKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036915Cyclin-like_sf