prot_H-elongata_contig82751.15915.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig82751.15915.1
Unique Nameprot_H-elongata_contig82751.15915.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length169
Homology
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 7.460e-89
Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKKKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 168
            LQGL  +FQGLRGGKTDP MLD+V+VESYGSM+ L++VAQASMKGPQLI+LSVYD  MTKA+EDAVREC MGLNP SEGQGQVHVPIPKPTKESREAVAK+AAKHAEKSKVV+RGIRHKI DQIKKKKDSFPED+VH R+KE+DKCT+DAEA    MLEKKKAEILTV
Sbjct:  132 LQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQVHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILTV 299          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.610e-38
Identity = 85/177 (48.02%), Postives = 111/177 (62.71%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQG----------QVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKKKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILT 167
            L+GLK D   LRGG+ DPAM D + V SYG    LS+VAQ S KGPQL+VL+ YD A   AV  AVR+  M LNP  +G             V VPIPK + E+RE++ K+A K  EK+KV +RGIRHK+ +++KK K +F ED+VH+R KE+D      EA     L+ KK +IL+
Sbjct:  158 LEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: UPI001BA79AAC (ribosome recycling factor n=1 Tax=Roseomonas terrae TaxID=424799 RepID=UPI001BA79AAC)

HSP 1 Score: 123 bits (309), Expect = 1.720e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK--KKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 168
            ++ LK +FQGLR G+  PA+L+ VRVE+YGS++ L+ VA  S+ GP L+ + V+D  +TKAVE A+RE ++GLNP +EGQ  + VP+P  T E R  + K AA++AE ++V +RG+R    +Q K   KK    EDEV Q   E+ K T          L  K+ +I TV
Sbjct:   20 IETLKKEFQGLRTGRASPALLEPVRVEAYGSVTPLNQVANVSIAGPGLLSVQVWDKGLTKAVESAIREANLGLNPQAEGQ-VIRVPLPPLTAERRNELVKAAARYAESTRVAIRGVRRDGMEQAKGWIKKHEASEDEVKQAETEIQKLTDQYVKQVDASLVDKEKDIRTV 188          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A840XNP9_9PROT (Ribosome-recycling factor n=12 Tax=Roseomonas TaxID=125216 RepID=A0A840XNP9_9PROT)

HSP 1 Score: 123 bits (308), Expect = 2.440e-32
Identity = 72/170 (42.35%), Postives = 108/170 (63.53%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK--KKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 168
            ++ LK +F GLR G+  PA+L+ +RVE+YGSM+ L+ VA  S+ GP L+ + V+D A+TK VE A+RE ++GLNP +EGQ  + VP+P  T E R  +AK AA++AE+++V +RG+R    +Q+K   KK    EDE  +   E+ K T          L +K+ +I TV
Sbjct:   20 METLKKEFAGLRTGRASPALLEPIRVEAYGSMTPLNQVANISVAGPGLLSVQVWDKALTKHVESAIREANLGLNPQAEGQ-VIRVPLPPLTTERRNELAKAAARYAEQTRVAIRGVRRDGMEQVKAWVKKHETSEDEAKRAEDEIQKLTDQYVKQVDAALAEKEKDIRTV 188          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A4R0Y5H3_9PROT (Ribosome-recycling factor n=4 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R0Y5H3_9PROT)

HSP 1 Score: 117 bits (292), Expect = 6.540e-30
Identity = 71/170 (41.76%), Postives = 107/170 (62.94%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIK--KKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 168
            L+ LK +F GLR G+  P++L+ +RVE+YGS   L+ VA  S+ GP ++ + V+D ++TKAVE A+R+  +GLNP SEGQ  + V +P  T++ R  +AK AAK++E +KV +RG+R    +QI+  KKK    ED+  +   EV K T D        L +K+ +I TV
Sbjct:   22 LETLKKEFAGLRTGRASPSLLEPIRVEAYGSNQPLAQVANVSVAGPSMLQVQVWDRSVTKAVEIAIRDSGLGLNPQSEGQ-TIRVMLPPLTEQRRNELAKTAAKYSEGAKVAIRGVRRDGMEQIQGWKKKSEIGEDDAKRWSDEVQKLTDDYVKKIDVSLAEKEKDIKTV 190          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A841GSD5_9BACT (Ribosome-recycling factor n=1 Tax=Longimicrobium terrae TaxID=1639882 RepID=A0A841GSD5_9BACT)

HSP 1 Score: 115 bits (288), Expect = 2.160e-29
Identity = 64/170 (37.65%), Postives = 106/170 (62.35%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIK--KKKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 168
            ++ L+ DFQ +R GK +PA+LDSVRVE+YG++  L+ V   S   P+++ +  +D    KA+E A+RE D+GLNPS++G   V +PIP  T++ R    K+  K AE+++V +R +R    D++K  +K D   ED++ +   +V K T    A   +M++ K+AE++ V
Sbjct:   15 IEALRRDFQSVRTGKANPALLDSVRVEAYGNLMPLNQVGTVSAPEPRMLTIQPWDKTQIKAIEKALRESDLGLNPSNDGN-LVRIPIPALTEDRRREFVKMLHKMAEEARVAVRQVRKDANDEVKARQKDDGLSEDDIRREQGDVQKLTDQYVAKVEEMVKAKEAEVMEV 183          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: R6HZC7_9PROT (Ribosome-recycling factor n=3 Tax=Azospirillum TaxID=191 RepID=R6HZC7_9PROT)

HSP 1 Score: 115 bits (288), Expect = 2.410e-29
Identity = 69/170 (40.59%), Postives = 110/170 (64.71%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK-KKDS-FPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 168
            ++ L+ DF  LR G+   ++LD + VE+YGSM+ LS V   S+  P+ + +S++D ++ KAV+ A+RE D+GLNP+S+GQ  + +PIP  ++E R+ + KIA K+AE++KV +R IR    D +KK KKD+   EDE  +   E+ K T ++     +ML  K+ +IL V
Sbjct:   19 IETLRGDFGSLRAGRAHVSLLDGIMVEAYGSMTPLSQVGTVSVPDPRTLSISIWDRSLAKAVDKALRESDLGLNPASDGQ-LIRIPIPPLSEERRKELVKIAGKYAEQNKVAIRNIRRDALDDVKKLKKDNQISEDEEKRFENEIQKLTDESIKKIEEMLSAKEKDILQV 187          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: UPI001BACEF9D (ribosome recycling factor n=2 Tax=Roseomonas TaxID=125216 RepID=UPI001BACEF9D)

HSP 1 Score: 115 bits (288), Expect = 2.610e-29
Identity = 71/172 (41.28%), Postives = 106/172 (61.63%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK----KKDSFPEDEVHQRMKEVDKCTQDAEANAGKMLEKKKAEILTV 168
            ++ L+ +F GLR G+  PA+L+ VRVE+YG  S L+ VA  S+ GP L+V+ V+D ++TKAVE A+R+  +GLNP +EGQ  + VP+P  T+E R  + K A K+AE S+V +RG+R    +++K     KK    EDE  +   EV K T         +L +K+ +I TV
Sbjct:   20 IETLRKEFAGLRTGRASPALLEPVRVEAYGGNSPLNQVANISVGGPGLLVVQVFDRSLTKAVEVAIRDSGLGLNPQAEGQ-VIRVPLPPLTQERRNDLVKTAHKYAEASRVAIRGVRRDGMERVKAMTADKKAPISEDEGKRTQDEVQKLTDQYIKQVDTLLAEKEKDIKTV 190          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: UPI001080271D (ribosome recycling factor n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001080271D)

HSP 1 Score: 114 bits (286), Expect = 5.210e-29
Identity = 63/140 (45.00%), Postives = 95/140 (67.86%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKK----KKDSFPEDEV 136
            ++ L+ +F GLR G+  PA+L+ +RVE+YG +S L+ VA  S+ GP L+ + V+D A+ KAVE A+RE ++GLNP +EGQ  + VP+P  T+E R  +AK AA++AE+++V +RG+R    +QIK     KK    EDE 
Sbjct:   20 METLRKEFAGLRTGRASPALLEPIRVEAYGGVSPLNQVANISVAGPGLLSVQVWDKALVKAVESAIREANLGLNPQTEGQ-VIRVPLPPLTQERRNELAKAAARYAEQTRVAIRGVRRDGMEQIKALVHDKKAPISEDEA 158          
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK)

HSP 1 Score: 116 bits (291), Expect = 7.400e-29
Identity = 63/144 (43.75%), Postives = 93/144 (64.58%), Query Frame = 0
Query:    1 LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIVLSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAKIAAKHAEKSKVVLRGIRHKIQDQIKKKKDSFPEDEVHQRMKEVD 144
            +Q L  D + LR G+ DPAM D ++V++YG  + LS VA  + +GPQL+V++VYD  +  AV+ A+REC MGLNP +   G + VP+PK +KE RE +A++A +  EK+K  +R  R    D+ KK     PEDE  + +KE+D
Sbjct:  108 IQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQALEGGALSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKKA--GLPEDESKRLVKEID 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82751.15915.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z6_9PHAE7.460e-8983.33RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CM55_9STRA8.610e-3848.02Ribosome recycling factor domain-containing protei... [more]
UPI001BA79AAC1.720e-3243.53ribosome recycling factor n=1 Tax=Roseomonas terra... [more]
A0A840XNP9_9PROT2.440e-3242.35Ribosome-recycling factor n=12 Tax=Roseomonas TaxI... [more]
A0A4R0Y5H3_9PROT6.540e-3041.76Ribosome-recycling factor n=4 Tax=Acetobacteraceae... [more]
A0A841GSD5_9BACT2.160e-2937.65Ribosome-recycling factor n=1 Tax=Longimicrobium t... [more]
R6HZC7_9PROT2.410e-2940.59Ribosome-recycling factor n=3 Tax=Azospirillum Tax... [more]
UPI001BACEF9D2.610e-2941.28ribosome recycling factor n=2 Tax=Roseomonas TaxID... [more]
UPI001080271D5.210e-2945.00ribosome recycling factor n=1 Tax=Crenalkalicoccus... [more]
A0A6V1LRG3_HETAK7.400e-2943.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.132.20coord: 2..165
e-value: 6.5E-49
score: 167.7
NoneNo IPR availableGENE3D3.30.1360.40coord: 15..90
e-value: 6.5E-49
score: 167.7
NoneNo IPR availablePANTHERPTHR20982:SF3MITOCHONDRIAL RIBOSOME RECYCLING FACTORcoord: 3..167
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 4..166
e-value: 3.8E-46
score: 157.0
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 3..167
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 3..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82751contigH-elongata_contig82751:687..2711 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82751.15915.1mRNA_H-elongata_contig82751.15915.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig82751 687..2711 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig82751.15915.1 ID=prot_H-elongata_contig82751.15915.1|Name=mRNA_H-elongata_contig82751.15915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
LQGLKHDFQGLRGGKTDPAMLDSVRVESYGSMSALSTVAQASMKGPQLIV
LSVYDSAMTKAVEDAVRECDMGLNPSSEGQGQVHVPIPKPTKESREAVAK
IAAKHAEKSKVVLRGIRHKIQDQIKKKKDSFPEDEVHQRMKEVDKCTQDA
EANAGKMLEKKKAEILTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac
IPR036191RRF_sf