prot_H-elongata_contig8236.15891.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8236.15891.1
Unique Nameprot_H-elongata_contig8236.15891.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length509
Homology
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BLAST of mRNA_H-elongata_contig8236.15891.1 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 5.180e-71
Identity = 195/288 (67.71%), Postives = 223/288 (77.43%), Query Frame = 0 
Query:    1 RINPQQVAKGKALAVRIKGLGHAGDWKGVLGALEDGPKNAIVCTVAINAFGRMGKWRSAIEVVNGMGEDGDDFDRPDAFVYASAINACGKAGRPVEAVALLSEMPSKGVEPDVVCFGAAIAALSEVAGTQNHIFWGSNPVLASDAEGGEAGGR--VGTVS--KRLRAHEKAMDFIQKMRRNGPSPNQQCFASAITACARARDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGMEIAYGIXXXXXXXXXXXXXXXXXXXXXXXRALLNEMASSG 284
            R++PQ V KGK LA RIK L  A D++G+L ALE+GPKNAIVCTVAI   G+ GKWR A+EV++GMG+ GD  DRPDAF YA+ INACGKAGRPVEAVALL+EMP++ V+PDVVCFG+AI AL EVAGTQN   WG      +D EGGE G +     V+  K  RAHEKA++ IQ+MRR GPSPN QC+ASAITACARA DP +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GME AYG+ XXXXXXXXXXX           +ALLNEM+  G
Sbjct:  180 RLDPQTVEKGKMLAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGDGSDRPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRK---GAD-EGGEGGDKPIASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXXXGLSRAGRAREAKALLNEMSERG 463
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BLAST of mRNA_H-elongata_contig8236.15891.1 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 1.200e-61
Identity = 181/280 (64.64%), Postives = 204/280 (72.86%), Query Frame = 0 
Query:   13 LAVRIKGLGHAGDWKGVLGALEDGPKNAIVCTVAINAFGRMGKWRSAIEVVNGMGEDGDDFDRPDAFVYASAINACGKAGRPVEAVALLSEMPSKGVEPDVVCFGAAIAALSEVAGTQNHIFWGSNPVLASDAEGGEAGGRVGTVS--------KRLRAHEKAMDFIQKMRRNGPSPNQQCFASAITACARARDPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHGMEIAYGIXXXXXXXXXXXXXXXXXXXXXXXRALLNEMASSG 284
            LA RIK L  A D++G+L ALE+GPKNAIVCTVAI   G+ GKWR A+EV++GMG+ G D  RPDAF YA+ INACGKAGRPVEAVALL+EMP++ V+PDVVCFG+AI AL EVAGTQN   WG         EGG        +         K  RAHEKA++ IQ MRR GPSPN QC+ASAITACARA DP +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GME AYG+ XXXXXXXXX             +ALLNEM+  G
Sbjct:    2 LAARIKELAKARDFEGMLEALEEGPKNAIVCTVAITCLGQAGKWREAVEVLDGMGKGGSD--RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRSTWGRKGAN----EGGXXXXXXXDMPMAAAVAGPKPTRAHEKALELIQDMRREGPSPNSQCYASAITACARAHDPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGMEKAYGVKXXXXXXXXXISGLSRAGRAREAKALLNEMSERG 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8236.15891.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB51_ECTSI5.180e-7167.71SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL58_9PHAE1.200e-6164.64SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 76..123
e-value: 2.8E-7
score: 30.6
coord: 252..300
e-value: 2.7E-12
score: 46.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 369..403
e-value: 1.4E-4
score: 19.8
coord: 185..218
e-value: 5.6E-5
score: 21.1
coord: 474..508
e-value: 6.6E-6
score: 24.0
coord: 439..472
e-value: 3.5E-4
score: 18.6
coord: 80..113
e-value: 7.9E-8
score: 30.0
coord: 220..254
e-value: 0.0011
score: 17.0
coord: 255..288
e-value: 4.1E-8
score: 30.9
coord: 405..436
e-value: 2.9E-4
score: 18.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 42..70
e-value: 0.022
score: 15.0
coord: 325..348
e-value: 0.032
score: 14.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 354..413
e-value: 1.0E-10
score: 41.5
coord: 171..230
e-value: 4.4E-6
score: 26.7
coord: 427..480
e-value: 1.4E-6
score: 28.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 472..506
score: 9.953
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 437..471
score: 10.315
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 182..216
score: 9.964
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 77..111
score: 12.101
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 39..73
score: 8.002
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 288..322
score: 8.824
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 367..401
score: 11.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 402..436
score: 10.863
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 217..252
score: 8.418
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 253..287
score: 12.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 323..357
score: 8.353
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 412..509
e-value: 1.9E-24
score: 88.0
coord: 5..133
e-value: 6.4E-21
score: 76.5
coord: 320..411
e-value: 3.5E-21
score: 77.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 159..313
e-value: 6.1E-44
score: 152.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 17..124
coord: 354..504
coord: 163..351

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8236contigH-elongata_contig8236:635..6966 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8236.15891.1mRNA_H-elongata_contig8236.15891.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8236 635..6966 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8236.15891.1 ID=prot_H-elongata_contig8236.15891.1|Name=mRNA_H-elongata_contig8236.15891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=509bp
RINPQQVAKGKALAVRIKGLGHAGDWKGVLGALEDGPKNAIVCTVAINAF
GRMGKWRSAIEVVNGMGEDGDDFDRPDAFVYASAINACGKAGRPVEAVAL
LSEMPSKGVEPDVVCFGAAIAALSEVAGTQNHIFWGSNPVLASDAEGGEA
GGRVGTVSKRLRAHEKAMDFIQKMRRNGPSPNQQCFASAITACARARDPS
AALRLMANMREDGVPPNEVVLNAAVDACGKGGAPDEAVKLLHGMEIAYGI
KPNVVSYNSAISALSRAGRAREARALLNEMASSGLKPDKVSFSAAMQGFA
AAGDRKSAASLSTEMKDRGVVMDIVSYGTAVSACGKAGDVDGALRLIKAR
LRNRVLQEMERAGIQANAVVYNAALDACGRSGDQEAAAKILSQMADAGVP
PNATSYTGAIAACSRSGDASKAIEWLETMSREGVPPETICYNYAMTACGR
SGDAGQAMWLLRLMREEGMSPNRISYSAAMFSLGKAGRLQDVLDLLREMH
AEGVEADEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf