prot_H-elongata_contig82341.15890.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig82341.15890.1
Unique Nameprot_H-elongata_contig82341.15890.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
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BLAST of mRNA_H-elongata_contig82341.15890.1 vs. uniprot
Match: D7FGQ9_ECTSI (Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.820e-7
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0 
Query:   12 RIRLNCHTLNQVAVGAAVGCGTGALWYFLYAKVI 45
            R+ L CHTL QVAVGAAVG  TG LWY LY+KV+
Sbjct:  140 RMCLQCHTLKQVAVGAAVGTTTGGLWYLLYSKVL 173
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BLAST of mRNA_H-elongata_contig82341.15890.1 vs. uniprot
Match: A0A485KZJ7_9STRA (Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZJ7_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.180e-5
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 0 
Query:    6 CYASIDRIRLNCHTLNQVAVGAAVGCGTGALWY-FLYAKVIP 46
            C   + RIRL  HT+ QV VGAAVG GTG LWY F+    IP
Sbjct:  276 CLVFVSRIRLGYHTVAQVVVGAAVGAGTGILWYIFMENMAIP 317
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig82341.15890.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGQ9_ECTSI3.820e-770.59Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculos... [more]
A0A485KZJ7_9STRA2.180e-557.14Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.144.10coord: 3..46
e-value: 2.4E-5
score: 25.5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig82341contigH-elongata_contig82341:2403..2540 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig82341.15890.1mRNA_H-elongata_contig82341.15890.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig82341 2403..2540 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig82341.15890.1 ID=prot_H-elongata_contig82341.15890.1|Name=mRNA_H-elongata_contig82341.15890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
SSTSTCYASIDRIRLNCHTLNQVAVGAAVGCGTGALWYFLYAKVIP
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