prot_H-elongata_contig81585.15826.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig81585.15826.1
Unique Nameprot_H-elongata_contig81585.15826.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A3R7D5H3_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D5H3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.670e-13
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSAS 36
            MNIAMEQT+E+VNGQLKA+YGDCFIRGNNGK  S S
Sbjct:   39 MNIAMEQTQEFVNGQLKAQYGDCFIRGNNGKPSSLS 74          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A7S2ATC3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ATC3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.120e-13
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSASK 37
            MNIAMEQTEEYVNGQLKAKYGDCFIRGNN    SAS+
Sbjct:   69 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISASR 105          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A7R9YDM9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDM9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.540e-13
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSASK 37
            MNIAMEQTEEYVNGQLKAKYGDCFIRGNN    SA K
Sbjct:   62 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNVLYISAQK 98          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: K3WM85_GLOUD (Sm domain-containing protein n=8 Tax=Oomycota TaxID=4762 RepID=K3WM85_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 6.440e-13
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSASK 37
            MNIAMEQT+EYVNGQLKA+YGDCFIRGNN    SASK
Sbjct:   45 MNIAMEQTQEYVNGQLKAQYGDCFIRGNNVLYISASK 81          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A396ZXB9_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZXB9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.280e-13
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNG 30
            MNIAMEQT+EYVNGQLKA+YGDCFIRGNNG
Sbjct:   39 MNIAMEQTQEYVNGQLKAQYGDCFIRGNNG 68          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A3Q0DVH0_CARSF (U6 snRNA-associated Sm-like protein LSm6 isoform X1 n=1 Tax=Carlito syrichta TaxID=1868482 RepID=A0A3Q0DVH0_CARSF)

HSP 1 Score: 65.9 bits (159), Expect = 1.080e-12
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSASKGQRVGAE 44
            MNIA+EQTEEYVNGQLK KYGD FIRGNNG +   S  +R G E
Sbjct:   41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNGNMCCTSAHRREGCE 84          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A836CMP0_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-12
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNN 29
            MNIAMEQTEEYVNGQLKAKYGDCFIRGNN
Sbjct:   79 MNIAMEQTEEYVNGQLKAKYGDCFIRGNN 107          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: UPI0015D5FDA6 (U6 snRNA-associated Sm-like protein LSm6 isoform X1 n=1 Tax=Cygnus atratus TaxID=8868 RepID=UPI0015D5FDA6)

HSP 1 Score: 64.7 bits (156), Expect = 1.510e-12
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKL 32
            MNIA+EQTEEYVNGQLK KYGD FIRGNNGKL
Sbjct:   41 MNIALEQTEEYVNGQLKNKYGDAFIRGNNGKL 72          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A087SBF4_AUXPR (U6 snRNA-associated Sm-like protein LSm6 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SBF4_AUXPR)

HSP 1 Score: 65.5 bits (158), Expect = 1.750e-12
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSA 35
            MNIAMEQTEEYVNGQLK +YGDCFIRGNNG  G A
Sbjct:   48 MNIAMEQTEEYVNGQLKNRYGDCFIRGNNGGRGWA 82          
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Match: A0A0U9HK22_KLENI (U6 snRNA-associated Sm-like protein LSm6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HK22_KLENI)

HSP 1 Score: 64.3 bits (155), Expect = 1.750e-12
Identity = 31/39 (79.49%), Postives = 31/39 (79.49%), Query Frame = 0
Query:    1 MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSASKGQ 39
            MNIAMEQTEEYVNGQLK KYGDCFIRGNN    S  K Q
Sbjct:   41 MNIAMEQTEEYVNGQLKNKYGDCFIRGNNVLYISTQKSQ 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81585.15826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R7D5H3_9STRA1.670e-1383.33Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]
A0A7S2ATC3_9STRA3.120e-1386.49Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9YDM9_9STRA3.540e-1386.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K3WM85_GLOUD6.440e-1383.78Sm domain-containing protein n=8 Tax=Oomycota TaxI... [more]
A0A396ZXB9_9STRA8.280e-1393.33Sm domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A3Q0DVH0_CARSF1.080e-1270.45U6 snRNA-associated Sm-like protein LSm6 isoform X... [more]
A0A836CMP0_9STRA1.100e-12100.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
UPI0015D5FDA61.510e-1290.63U6 snRNA-associated Sm-like protein LSm6 isoform X... [more]
A0A087SBF4_AUXPR1.750e-1285.71U6 snRNA-associated Sm-like protein LSm6 n=1 Tax=A... [more]
A0A0U9HK22_KLENI1.750e-1279.49U6 snRNA-associated Sm-like protein LSm6 n=1 Tax=K... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..29
e-value: 3.3E-5
score: 23.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..35
e-value: 1.1E-11
score: 46.2
NoneNo IPR availablePANTHERPTHR11021:SF4coord: 1..39
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..39
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81585contigH-elongata_contig81585:657..791 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81585.15826.1mRNA_H-elongata_contig81585.15826.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig81585 630..791 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig81585.15826.1 ID=prot_H-elongata_contig81585.15826.1|Name=mRNA_H-elongata_contig81585.15826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MNIAMEQTEEYVNGQLKAKYGDCFIRGNNGKLGSASKGQRVGAEY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf