prot_H-elongata_contig8111.15766.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8111.15766.1
Unique Nameprot_H-elongata_contig8111.15766.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1324
Homology
BLAST of mRNA_H-elongata_contig8111.15766.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 772 bits (1994), Expect = 6.570e-238
Identity = 593/1431 (41.44%), Postives = 753/1431 (52.62%), Query Frame = 0
Query:    4 LSADVQVEVSSVAVYQAHP-DDAASPLA----------VDALEPIVSWG-----------EDTNGPSVESPGAMTGNSARSVRRCLIDRAQRLRRESSSVEALTESPESPTSAETQQKPRSARNTPRGHATATPSSPHGTLLLPKGRPRTV-SEVCALQYRLLKRSEGYGGAVDNEVLGGAGGGDFVGGASALTCHNVAAGALRVRIGEVLLERMLNF---VGREKINED------------------------AETETQPEQEPESVADSA-DQRQGGVLDSAGVIPARNLNSLLPPPPRASAVRRTSRPSTVTTSETSLHLVLQSVDVALKLPATSATAEEESALAIEGNGCGSSAAFPSAATSFLVLSFRRFEADGSESNTSVVENGAPRETRAQRSVSFYADPREDNMCQRVCLFLLDDLSVVVVDGSAVAEATAEQGQPIAGSTMP-----SLAENVFAAGAGTTLPALYRLIQVGGARANAKILSTSSVGRVPGGAGAEMVVGAAVALRNPPEVLFNASCETVHVSASRGAGVVMVQACLLGKTVWSRSPWGDVNSDGGRENPRDSSDSGATGRQLWRRGIRTSLEGVCVGGAVKDGSVQLTGNMSRLSVGRVG-GSGSSWPHSVYPAIGADVALFAAPPGDGGGDGLSYSAELAKDGRESWKIKLATTFKSASIHYVRTKRAVRELKEVMNE-------CKAAATAAAPRSSSRVEFDIRGASVIMLLPFELRLEVDGVQLNSR------PPSRLPLIGDGIDLDLVARDVKVFQALHGASRWRSQDAQPPAIRCSARGSVSIRPSAKETRVALESEHVRVRLTPRFCSSFGLFVRFMVGPPTWPTPVTHSTAPAAAPGAIVPVSFTFMLRLRKAD-------------------------QNTLGAVSSGRGSTSSFEMDFESVTGTQRRDARLNAPALPQSALRLIVAFLGANPDSGGGGSVERGVDVFWAWVARVSPRKGNEHRRGGCGKRGSLYVKPFIIPLNGVALRSGARAFSVGVKTWGPWHRMVSSLSLRLAPTLLTCYPPTFRELVSSYNRFGSNAFRSYRSRADMPTRRTAVVHYDVDIRGCGAVLLASLADGARGIHVSAELIEVKEDKEGTTR---PSGGILSRRGQDGHGPSRSIVDDTVLAISGLIGPVEIAFVQDWQSLPVLLPRGGDGLGSGSVHGAEAGATASGEGVRITPLCVSIDVRWVVSYDRADRCRLDVSLSSVQFYLEQPHFDLFMRVAQIFFAADYPGALPP----------PKSPSKLSTSGGG-RWAKIDSFLAVSLRLSLLQIVLAMGKKNGSLPPVLEIDVASVRLARGGVLTVRHVSINSWAQGVEDLTALPGAVPTTMRRGDGGG-GYCVLARSGHSEDSGKDFARMEVRVQEIPQSRRRSLPSLPQLDVVFQV 1324
            LS DV+V+VSS+ V  A   +DAA+P A          +D LEP+VSWG           ++ +  S  + G     +A  V+RCLI+ AQ       S E      ES    E+    +SAR  P          P   +  P   PR V  +  ALQYRLLKR    GG    +    +GG    G  S L CH++A GALRV++ E+LLE++L F   VG E    +                        A  + +P      ++  A D   G  L S   +P R +NS                     +SETSLH  L+SV+VAL L   +  A         G   G  +    A   F VLS  + E  GSES       G       Q  V+     + D   QR+C  +L +LS+V++DGS  A   A++  P+     P     SLA+ VF AG  T    + RL+++GGAR  A+ILS       P           AV   + P+ LFNAS E+  V  S GA +++++A +L + +    P     S G    PR   + G      W RG+  +LEGV VGG VK G  QLTGNM RLSVGR+G G       SV P+   DV +  A  G+G  +GLS++ E++ D      +KLAT FKSA +H++  K+ V ++     E       C  +ATAAA R S   EFDIRG++V + LPFEL LEV+ V L +        P      GD +DLD+VA DV++F   HG+S + S+D  PPAIRC+ARG V++RP+A  T V+LESEHVRVRLTP FCSSFGLFVR MVGPP  P     + A     G   P SFTF L++R  D                         Q+   A + G GS +SF+M FE+V  TQRR+   NAPALP  A +LI AF+G     G          VF AW+   S RK    R  G  + G  YV+PF++ L   +  + A+AFSV   + GP HR+V+SLSLRLAP +L  YPPTFR L+  YNRF +NAFRS+RSRADMP RR AV+ YD+DI+GC AVLLASLADGARG+H+SA  +  KED         P+G   S           SI  DT LA+SG +GPV +AF+QDW+S+   LP        G + G  A A           LC  ID+RW + YD  DRCR DVSLSSVQFYLEQPHFDL +RVAQIF AADYPGALPP          P+ P   +  GG    A++DSFLA SLRL LLQ VLA GK++GS PPVLEIDVASVRLARGGVLTVRH+S+NSW+Q  +       A        DG G GY VL RSG SE+SGKDF RMEVRV EI   +    P   QLDVV QV
Sbjct:  753 LSTDVKVDVSSIVVRHARLFEDAATPAADKPPDQADKGLDYLEPVVSWGAAVMPDAPPTSQEGDLGSGRTDGLADLRTAAIVQRCLIELAQ------GSPELGAADGES-IDGESNSSRQSAR-APXXXXXXXXXXPWAQVF-PSAAPRPVPKDSSALQYRLLKRK---GGGTSTDGSPDSGGVAITGTVSTLACHDLAVGALRVQLAELLLEKLLKFFGVVGGEAGGTEPXXXXXXXXXXXXXXXXXXXXVALASVQGRPPPRASRLSPRASDAGSGSALSSPRTLPPRPVNS---------------------SSETSLHFALRSVEVALGLAGGAHEA---------GENVGDRSRDQPA---FCVLSLSQLELSGSESALYGCGGGE------QHFVATAPQRQRDEESQRLCSLVLGNLSIVLIDGSVQA---ADESAPLGRQGSPPLMSRSLAQEVFLAGGNTA--GIRRLVRLGGARVTAEILSKLVGDTEP----------TAVGTYSAPDFLFNASLESGEVCVSVGAALLVLEAYVLARKMGGVYPDALAISVGEICAPRVHRNRG------WSRGVGAALEGVSVGGVVKSGGCQLTGNMRRLSVGRMGAGVPLQGESSVMPS---DVVVLEALRGEGSDEGLSWTLEVSGDSEGVGGVKLATVFKSARLHHMNAKKVVEDIMLASKEWTARAARCLPSATAAARRRSQPFEFDIRGSTVTLHLPFELELEVEDVHLGTPGFNQAVEPEGERANGD-LDLDIVAGDVRMFHKPHGSSFYSSEDVVPPAIRCAARGVVAVRPTANATAVSLESEHVRVRLTPAFCSSFGLFVRLMVGPPPRPLAADAAAAALMREGR-PPNSFTFELKVRTVDVGFFTGPCCPSAVSAAFLVGGVSMKQHATAAGAPGAGSRASFQMSFEAVEATQRRNPSRNAPALPYEAAQLIGAFVGHGGAPG----------VFSAWL---SARK----RPVGSSQAGPTYVQPFLVALGSSS--ATAQAFSVVSTSSGPRHRLVNSLSLRLAPMMLAWYPPTFRILMGHYNRFAANAFRSFRSRADMPRRRIAVLSYDIDIQGCSAVLLASLADGARGVHLSAGKVTFKEDTAAAAAAASPAGMGGSHASSSALALDASIAPDTTLAMSGFVGPVGMAFLQDWRSV---LPTSVAPSAGGRLDGDAAAAPVQ--------LCAPIDLRWAMFYDEFDRCRQDVSLSSVQFYLEQPHFDLCVRVAQIFVAADYPGALPPAVVAPQIAGHPQDPVHGAPVGGATNNAQVDSFLATSLRLPLLQFVLANGKRSGSFPPVLEIDVASVRLARGGVLTVRHLSVNSWSQDADSPARSEAAAGEIGNENDGSGCGYRVLGRSGQSEESGKDFLRMEVRVPEIRSGKLG--PRQAQLDVVLQV 2074          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8111.15766.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE6.570e-23841.44VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8111contigH-elongata_contig8111:5278..9672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8111.15766.1mRNA_H-elongata_contig8111.15766.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8111 971..9672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8111.15766.1 ID=prot_H-elongata_contig8111.15766.1|Name=mRNA_H-elongata_contig8111.15766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1324bp
MDLLSADVQVEVSSVAVYQAHPDDAASPLAVDALEPIVSWGEDTNGPSVE
SPGAMTGNSARSVRRCLIDRAQRLRRESSSVEALTESPESPTSAETQQKP
RSARNTPRGHATATPSSPHGTLLLPKGRPRTVSEVCALQYRLLKRSEGYG
GAVDNEVLGGAGGGDFVGGASALTCHNVAAGALRVRIGEVLLERMLNFVG
REKINEDAETETQPEQEPESVADSADQRQGGVLDSAGVIPARNLNSLLPP
PPRASAVRRTSRPSTVTTSETSLHLVLQSVDVALKLPATSATAEEESALA
IEGNGCGSSAAFPSAATSFLVLSFRRFEADGSESNTSVVENGAPRETRAQ
RSVSFYADPREDNMCQRVCLFLLDDLSVVVVDGSAVAEATAEQGQPIAGS
TMPSLAENVFAAGAGTTLPALYRLIQVGGARANAKILSTSSVGRVPGGAG
AEMVVGAAVALRNPPEVLFNASCETVHVSASRGAGVVMVQACLLGKTVWS
RSPWGDVNSDGGRENPRDSSDSGATGRQLWRRGIRTSLEGVCVGGAVKDG
SVQLTGNMSRLSVGRVGGSGSSWPHSVYPAIGADVALFAAPPGDGGGDGL
SYSAELAKDGRESWKIKLATTFKSASIHYVRTKRAVRELKEVMNECKAAA
TAAAPRSSSRVEFDIRGASVIMLLPFELRLEVDGVQLNSRPPSRLPLIGD
GIDLDLVARDVKVFQALHGASRWRSQDAQPPAIRCSARGSVSIRPSAKET
RVALESEHVRVRLTPRFCSSFGLFVRFMVGPPTWPTPVTHSTAPAAAPGA
IVPVSFTFMLRLRKADQNTLGAVSSGRGSTSSFEMDFESVTGTQRRDARL
NAPALPQSALRLIVAFLGANPDSGGGGSVERGVDVFWAWVARVSPRKGNE
HRRGGCGKRGSLYVKPFIIPLNGVALRSGARAFSVGVKTWGPWHRMVSSL
SLRLAPTLLTCYPPTFRELVSSYNRFGSNAFRSYRSRADMPTRRTAVVHY
DVDIRGCGAVLLASLADGARGIHVSAELIEVKEDKEGTTRPSGGILSRRG
QDGHGPSRSIVDDTVLAISGLIGPVEIAFVQDWQSLPVLLPRGGDGLGSG
SVHGAEAGATASGEGVRITPLCVSIDVRWVVSYDRADRCRLDVSLSSVQF
YLEQPHFDLFMRVAQIFFAADYPGALPPPKSPSKLSTSGGGRWAKIDSFL
AVSLRLSLLQIVLAMGKKNGSLPPVLEIDVASVRLARGGVLTVRHVSINS
WAQGVEDLTALPGAVPTTMRRGDGGGGYCVLARSGHSEDSGKDFARMEVR
VQEIPQSRRRSLPSLPQLDVVFQV
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