prot_H-elongata_contig80933.15749.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80933.15749.1
Unique Nameprot_H-elongata_contig80933.15749.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length105
Homology
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A6H5JPH2_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPH2_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 6.350e-48
Identity = 80/99 (80.81%), Postives = 88/99 (88.89%), Query Frame = 0
Query:    1 VHGGTGPEDPGPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 99
            VHGGTG +DPGPGGRRSVRQ+LPY LTPT+S D PLHRPLHCHRLDK TGGLL+CAKTRPALSA+ DAFE+R VSKRY+ALV+G LEGSG IVT LD K
Sbjct:  181 VHGGTGEDDPGPGGRRSVRQALPYMLTPTKSKDRPLHRPLHCHRLDKATGGLLICAKTRPALSAIGDAFEQRLVSKRYVALVAGELEGSGAIVTPLDGK 279          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A836CLS8_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-21
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0
Query:   17 SVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 99
            S+R ++ + L P+ + D+ L RP H HRLD PTGGL+VCAKTRPAL  ++ AF++R+V KRY ALV+G LEGSG I T L  K
Sbjct:  151 SLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGK 233          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A0M0KBI6_9EUKA (Ribosomal large subunit pseudouridine synthase d (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KBI6_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-18
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 0
Query:    5 TGPEDPGPGGRRSVRQSLPYALTPTRSG-DSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGS-GCIVTALDDK 99
            T P   G  G +S+R ++ YALT    G    L+RP  CHRLDKPT GLLVCAKT+PAL A+N AF +R+V+KRY A+V G + G  G I  ALD K
Sbjct:  120 THPPPGGATGSQSMRTAIQYALTAPPIGMPGALYRPHLCHRLDKPTSGLLVCAKTKPALLALNRAFAERRVAKRYHAIVGGAVVGEHGRIELALDGK 216          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S4BPC4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BPC4_CHRCT)

HSP 1 Score: 87.8 bits (216), Expect = 2.860e-18
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 0
Query:    7 PEDPGPGGRRSVRQSLPYALTPTRSGD-SPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEG-SGCIVTALDDK 99
            P   G  GR+S+R ++ YA+ P  SG    L+RP   HRLDK T GLL+CAKT+PAL +++ AF +R+VSKRY+A+V G +EG SG I   LD K
Sbjct:  181 PPPGGAAGRQSMRTAVQYAVAPPASGTPGALYRPHLVHRLDKGTSGLLLCAKTKPALVSLSSAFAQRRVSKRYVAVVVGYVEGESGKIDAPLDGK 275          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: I0YKT8_COCSC (PseudoU_synth_2 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YKT8_COCSC)

HSP 1 Score: 84.7 bits (208), Expect = 5.260e-17
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   11 GPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 99
            G GG + V  SL Y LTP+    S L RP H HRLD PTGGLL+ AKTRPA+ +++ AF +R+V K Y+A+V   L+G G I  ALD +
Sbjct:  146 GMGGVKDVVGSLGYLLTPSSKVGS-LWRPQHVHRLDAPTGGLLMVAKTRPAIKSLSAAFAQREVKKTYMAIVGARLDGRGSIEYALDGR 233          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A8J9SN91_9CHLO (Probable ribosomal large subunit pseudouridine synthase D n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SN91_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.050e-16
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 0
Query:   11 GPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDK 99
            G GG + V  SL Y LTP+    S L RP H HRLD PTGGLL+ AKTR A+ +++ AF +R+V K Y+A+V G L+G G I   LD K
Sbjct:  299 GMGGVKDVVGSLGYLLTPSSKVGS-LWRPQHVHRLDAPTGGLLMVAKTRAAIKSLSAAFAQREVKKTYMAIVGGRLDGRGSIEYPLDGK 386          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S2RLL2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLL2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.910e-16
Identity = 45/99 (45.45%), Postives = 59/99 (59.60%), Query Frame = 0
Query:    1 VHGGTGPEDPGPGGR--RSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALD 97
             HG  G ED G       S++ ++ Y+L PT S D PL RP HCHRLD  T GL++ AKTRPAL  +   F +R++ K+Y A+V G L G G I   +D
Sbjct:   59 THGNRGGEDAGATASLGASLKTAILYSLQPTPSTDEPLRRPEHCHRLDAATFGLVLVAKTRPALRRLTADFAERRIRKQYRAVVHGKLIGEGVIEEPVD 157          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S3UCU8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCU8_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-15
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 0
Query:   14 GRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCI 92
            G+ +++Q LPY L P     + LHRP H HRLD PTGGLL+ AKT+ ++  M   F +RQV KRY A+V G LEG G I
Sbjct:  123 GKTTLQQLLPYLLQPAHVQGA-LHRPHHVHRLDMPTGGLLIAAKTQASIREMGILFHERQVQKRYRAVVIGCLEGEGTI 200          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A7S4C3Z6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3Z6_CHRCT)

HSP 1 Score: 79.7 bits (195), Expect = 2.210e-15
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 0
Query:   14 GRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSG 84
            GR +VR  L Y+L P+++ + PL RP H HRLD PT GLLV AK+RPA+SA+++AF +RQV K Y A+V+G
Sbjct:  165 GRLNVRTMLAYSLQPSQNAE-PLWRPQHVHRLDAPTSGLLVVAKSRPAISALHEAFAQRQVRKTYRAVVAG 234          
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Match: A0A6V2G5C6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2G5C6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.520e-15
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 0
Query:   14 GRRSVRQSLPYALTPTRSGDSPLHR-PLHCHRLDKPTGGLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGI-LEGSGCIVTALDDKVI 101
            G  ++R +LP+AL P + G S ++R PL  HRLDKPT GLL+ AKT+PAL  +++ FE+R V K Y A+V+GI  E   C +TA +  ++
Sbjct:  302 GIMTIRHALPFALKPPKRGTSEIYRRPLAVHRLDKPTSGLLIVAKTKPALVNLSNQFEQRIVKKTYTAIVNGIPSEPLECSITAEEALIL 391          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80933.15749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH2_9PHAE6.350e-4880.81PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A836CLS8_9STRA2.300e-2156.63Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A0M0KBI6_9EUKA1.190e-1853.61Ribosomal large subunit pseudouridine synthase d (... [more]
A0A7S4BPC4_CHRCT2.860e-1851.58Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
I0YKT8_COCSC5.260e-1751.69PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A8J9SN91_9CHLO2.050e-1651.69Probable ribosomal large subunit pseudouridine syn... [more]
A0A7S2RLL2_9STRA4.910e-1645.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UCU8_9CHLO1.030e-1551.90Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S4C3Z6_CHRCT2.210e-1556.34Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6V2G5C6_9STRA4.520e-1546.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 6..100
e-value: 1.2E-16
score: 62.9
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 27..92
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 38..94
e-value: 3.7E-14
score: 53.1
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 19..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80933contigH-elongata_contig80933:521..2071 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80933.15749.1mRNA_H-elongata_contig80933.15749.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80933 521..2071 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80933.15749.1 ID=prot_H-elongata_contig80933.15749.1|Name=mRNA_H-elongata_contig80933.15749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
VHGGTGPEDPGPGGRRSVRQSLPYALTPTRSGDSPLHRPLHCHRLDKPTG
GLLVCAKTRPALSAMNDAFEKRQVSKRYIALVSGILEGSGCIVTALDDKV
IFCC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf