prot_H-elongata_contig80827.15741.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig80827.15741.1
Unique Nameprot_H-elongata_contig80827.15741.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length60
Homology
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BLAST of mRNA_H-elongata_contig80827.15741.1 vs. uniprot
Match: D8LHL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.380e-16
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0 
Query:    1 SFLFFALSTLAQHYVNRGVEDEPMP-PLGKFPTLGFKKDNPNEPRSFYRRAEQGIRIRGS 59
            S L+  LS    HY+N+G+ED  +  P GKFPT+GFKK+NPNE RS YRRAEQGIRIRGS
Sbjct:  123 SLLWRILSEKFPHYINQGLEDTQVQVPNGKFPTIGFKKENPNESRSNYRRAEQGIRIRGS 182
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BLAST of mRNA_H-elongata_contig80827.15741.1 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.820e-15
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0 
Query:    1 SFLFFALSTLAQHYVNRGVEDEPMP-PLGKFPTLGFKKDNPNEPRSFYRRAEQGIRIRGS 59
            S L+  LS    HY+N+G+ED  +  P GKFPT+GFKK+NPNE RS YRRAEQGIRIRGS
Sbjct: 1803 SLLWRILSDKFPHYINQGLEDTQVQVPNGKFPTIGFKKENPNESRSNYRRAEQGIRIRGS 1862
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80827.15741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHL1_ECTSI5.380e-1665.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU31_9PHAE6.820e-1565.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..59
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80827contigH-elongata_contig80827:39..872 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80827.15741.1mRNA_H-elongata_contig80827.15741.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig80827 39..872 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig80827.15741.1 ID=prot_H-elongata_contig80827.15741.1|Name=mRNA_H-elongata_contig80827.15741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
SFLFFALSTLAQHYVNRGVEDEPMPPLGKFPTLGFKKDNPNEPRSFYRRA
EQGIRIRGS*
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