mRNA_H-elongata_contig80827.15741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80827.15741.1
Unique NamemRNA_H-elongata_contig80827.15741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80827.15741.1 vs. uniprot
Match: D8LHL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.380e-16
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 SFLFFALSTLAQHYVNRGVEDEPMP-PLGKFPTLGFKKDNPNEPRSFYRRAEQGIRIRGS 177
            S L+  LS    HY+N+G+ED  +  P GKFPT+GFKK+NPNE RS YRRAEQGIRIRGS
Sbjct:  123 SLLWRILSEKFPHYINQGLEDTQVQVPNGKFPTIGFKKENPNESRSNYRRAEQGIRIRGS 182
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BLAST of mRNA_H-elongata_contig80827.15741.1 vs. uniprot
Match: A0A6H5KU31_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU31_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.820e-15
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 SFLFFALSTLAQHYVNRGVEDEPMP-PLGKFPTLGFKKDNPNEPRSFYRRAEQGIRIRGS 177
            S L+  LS    HY+N+G+ED  +  P GKFPT+GFKK+NPNE RS YRRAEQGIRIRGS
Sbjct: 1803 SLLWRILSDKFPHYINQGLEDTQVQVPNGKFPTIGFKKENPNESRSNYRRAEQGIRIRGS 1862
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80827.15741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHL1_ECTSI5.380e-1665.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU31_9PHAE6.820e-1565.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80827contigH-elongata_contig80827:39..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_003540.1
Exons2
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931214.7455199-CDS-H-elongata_contig80827:38..1491622931214.7455199-CDS-H-elongata_contig80827:38..149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80827 39..149 +
1691679744.8079467-CDS-H-elongata_contig80827:38..1491691679744.8079467-CDS-H-elongata_contig80827:38..149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80827 39..149 +
1622931214.7662199-CDS-H-elongata_contig80827:803..8721622931214.7662199-CDS-H-elongata_contig80827:803..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80827 804..872 +
1691679744.8176832-CDS-H-elongata_contig80827:803..8721691679744.8176832-CDS-H-elongata_contig80827:803..872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80827 804..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80827.15741.1prot_H-elongata_contig80827.15741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80827 39..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80827.15741.1

>prot_H-elongata_contig80827.15741.1 ID=prot_H-elongata_contig80827.15741.1|Name=mRNA_H-elongata_contig80827.15741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
SFLFFALSTLAQHYVNRGVEDEPMPPLGKFPTLGFKKDNPNEPRSFYRRA
EQGIRIRGS*
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mRNA from alignment at H-elongata_contig80827:39..872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80827.15741.1 ID=mRNA_H-elongata_contig80827.15741.1|Name=mRNA_H-elongata_contig80827.15741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at H-elongata_contig80827:39..872+ (Himanthalia elongata Himel1 dioecious)
TCATTTTTGTTTTTTGCCCTTTCAACGCTCGCCCAGCACTATGTCAACAG
GGGAGTAGAAGACGAACCCATGCCACCCCTAGGAAAGTTCCCGACCCTCG
GCTTCAAGAAGGTACTGGTAGAACTCTCTATTTTATAGTCTTTATAGCAT
TGAGCTCTGAGGAACGGAAAGCACAAGCAGCGGGGGTGGAATGTTCAGAA
CGTAGGTTTCCGACAAACCGTCGCGGACTTGAACCCCCAACCGTTGAGTT
TGGAAATCAAAGTTCTCCCCATGGAACTTTCTTGGAACTATCTTCCCTAA
CCCTACACTTCTAGCTTTTTTTTTTTTGAAAGTTTTCAATGAGCTAAAAT
ACCGTATAGCCAGTGTTGCTCTTGGTACAGCTCTCTCTTTTTTTTACAAC
CCAGAACTCATATATTTTCTGAAGCGTGATTTTACCTCTCAATCGGAGGC
ATCACGAGAGCGTCCCATATCAGGAACCAACTCCACTAGCCATGATGTTT
TTTGTTTTTTTTATTTGAATGTTTGAAAAACACATCCAGCACTCTTATTG
TTTATTATTGATAATTTTTTTAGGATCGATCATGCAGATCTCGATAATCG
TTGCGTAAATTTAATCTCACGGATCGAATGCCCTGAAAATTTATTTAACG
AGCTCTGCAGGCTGCGGTTGGTTGGAGTTGATGAGATCGCGTCTCCACCC
CGCTACATTTCTGGCTTCACCGCCGCGCGTTCCGTTCCGTTTTATTCCAT
TCCATTCCTACCCAGGATAACCCCAACGAACCGCGGAGCTTCTATCGCAG
GGCGGAACAGGGGATACGGATACGCGGGAGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig80827:39..872+

>mRNA_H-elongata_contig80827.15741.1 ID=mRNA_H-elongata_contig80827.15741.1|Name=mRNA_H-elongata_contig80827.15741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig80827:39..872+ (Himanthalia elongata Himel1 dioecious)
TCATTTTTGTTTTTTGCCCTTTCAACGCTCGCCCAGCACTATGTCAACAG
GGGAGTAGAAGACGAACCCATGCCACCCCTAGGAAAGTTCCCGACCCTCG
GCTTCAAGAAGTCATTTTTGTTTTTTGCCCTTTCAACGCTCGCCCAGCAC
TATGTCAACAGGGGAGTAGAAGACGAACCCATGCCACCCCTAGGAAAGTT
CCCGACCCTCGGCTTCAAGAAGGATAACCCCAACGAACCGCGGAGCTTCT
ATCGCAGGGCGGAACAGGGGATACGGATACGCGGGAGCTGAGATAACCCC
AACGAACCGCGGAGCTTCTATCGCAGGGCGGAACAGGGGATACGGATACG
CGGGAGCTGA
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